Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26085 and ABID97_RS26090 are separated by 232 nucleotides ABID97_RS26090 and ABID97_RS26095 are separated by 142 nucleotides ABID97_RS26095 and ABID97_RS26100 are separated by 10 nucleotides
ABID97_RS26085: ABID97_RS26085 - histidine kinase, at 140,918 to 141,982
_RS26085
ABID97_RS26090: ABID97_RS26090 - homoserine O-acetyltransferase, at 142,215 to 143,396
_RS26090
ABID97_RS26095: ABID97_RS26095 - SRPBCC family protein, at 143,539 to 143,988
_RS26095
ABID97_RS26100: ABID97_RS26100 - LysR family transcriptional regulator, at 143,999 to 144,895
_RS26100
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 141.636 kb on + strand, within ABID97_RS26085 at 141.637 kb on - strand, within ABID97_RS26085 at 142.018 kb on + strand at 142.477 kb on - strand, within ABID97_RS26090 at 143.148 kb on + strand, within ABID97_RS26090 at 143.220 kb on - strand, within ABID97_RS26090 at 143.302 kb on - strand at 143.302 kb on - strand at 143.395 kb on - strand at 143.599 kb on + strand, within ABID97_RS26095 at 143.733 kb on + strand, within ABID97_RS26095 at 143.924 kb on - strand, within ABID97_RS26095 at 144.387 kb on + strand, within ABID97_RS26100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 141,636 + ABID97_RS26085 0.67 -0.5 141,637 - ABID97_RS26085 0.68 +0.7 142,018 + -0.5 142,477 - ABID97_RS26090 0.22 -2.6 143,148 + ABID97_RS26090 0.79 +1.3 143,220 - ABID97_RS26090 0.85 +0.1 143,302 - +1.2 143,302 - -0.4 143,395 - -0.1 143,599 + ABID97_RS26095 0.13 -3.1 143,733 + ABID97_RS26095 0.43 -0.0 143,924 - ABID97_RS26095 0.86 +0.0 144,387 + ABID97_RS26100 0.43 +0.2
Or see this region's nucleotide sequence