Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26000

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25990 and ABID97_RS25995 are separated by 31 nucleotidesABID97_RS25995 and ABID97_RS26000 are separated by 27 nucleotidesABID97_RS26000 and ABID97_RS26005 are separated by 24 nucleotidesABID97_RS26005 and ABID97_RS26010 are separated by 45 nucleotides ABID97_RS25990: ABID97_RS25990 - aldehyde dehydrogenase, at 121,907 to 123,397 _RS25990 ABID97_RS25995: ABID97_RS25995 - SDR family oxidoreductase, at 123,429 to 124,217 _RS25995 ABID97_RS26000: ABID97_RS26000 - quinone oxidoreductase, at 124,245 to 125,228 _RS26000 ABID97_RS26005: ABID97_RS26005 - SDR family NAD(P)-dependent oxidoreductase, at 125,253 to 126,002 _RS26005 ABID97_RS26010: ABID97_RS26010 - ABC transporter substrate-binding protein, at 126,048 to 127,208 _RS26010 Position (kb) 124 125 126Strain fitness (log2 ratio) -1 0 1at 124.375 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000at 125.257 kb on + strandat 125.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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124,375 - ABID97_RS26000 0.13 -0.9
124,513 - ABID97_RS26000 0.27 +0.5
124,513 - ABID97_RS26000 0.27 +0.3
124,709 - ABID97_RS26000 0.47 +0.4
124,709 - ABID97_RS26000 0.47 -0.4
125,257 + +0.1
125,276 - +0.3

Or see this region's nucleotide sequence