Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25860 and ABID97_RS25865 overlap by 13 nucleotides ABID97_RS25865 and ABID97_RS25870 are separated by 1 nucleotides ABID97_RS25870 and ABID97_RS25875 are separated by 40 nucleotides
ABID97_RS25860: ABID97_RS25860 - LysR family transcriptional regulator, at 92,404 to 93,282
_RS25860
ABID97_RS25865: ABID97_RS25865 - amidohydrolase family protein, at 93,270 to 94,166
_RS25865
ABID97_RS25870: ABID97_RS25870 - IlvD/Edd family dehydratase, at 94,168 to 95,922
_RS25870
ABID97_RS25875: ABID97_RS25875 - tripartite tricarboxylate transporter substrate binding protein, at 95,963 to 96,961
_RS25875
Position (kb) 94
95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 93.266 kb on - strand at 93.266 kb on - strand at 93.451 kb on + strand, within ABID97_RS25865 at 93.452 kb on - strand, within ABID97_RS25865 at 93.511 kb on + strand, within ABID97_RS25865 at 93.533 kb on - strand, within ABID97_RS25865 at 93.839 kb on + strand, within ABID97_RS25865 at 94.042 kb on + strand, within ABID97_RS25865 at 94.395 kb on - strand, within ABID97_RS25870 at 94.395 kb on - strand, within ABID97_RS25870 at 94.943 kb on + strand, within ABID97_RS25870 at 94.943 kb on + strand, within ABID97_RS25870 at 94.944 kb on - strand, within ABID97_RS25870 at 95.600 kb on + strand, within ABID97_RS25870 at 95.846 kb on + strand at 96.070 kb on - strand, within ABID97_RS25875 at 96.390 kb on + strand, within ABID97_RS25875 at 96.411 kb on - strand, within ABID97_RS25875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 93,266 - +1.1 93,266 - +0.3 93,451 + ABID97_RS25865 0.20 +0.9 93,452 - ABID97_RS25865 0.20 -4.5 93,511 + ABID97_RS25865 0.27 -1.0 93,533 - ABID97_RS25865 0.29 -0.5 93,839 + ABID97_RS25865 0.63 +0.1 94,042 + ABID97_RS25865 0.86 -0.5 94,395 - ABID97_RS25870 0.13 +0.5 94,395 - ABID97_RS25870 0.13 -0.9 94,943 + ABID97_RS25870 0.44 -2.9 94,943 + ABID97_RS25870 0.44 -1.3 94,944 - ABID97_RS25870 0.44 +0.3 95,600 + ABID97_RS25870 0.82 -1.3 95,846 + -1.4 96,070 - ABID97_RS25875 0.11 -0.5 96,390 + ABID97_RS25875 0.43 +1.4 96,411 - ABID97_RS25875 0.45 -2.0
Or see this region's nucleotide sequence