Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25700

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25695 and ABID97_RS25700 are separated by 112 nucleotidesABID97_RS25700 and ABID97_RS25705 overlap by 20 nucleotides ABID97_RS25695: ABID97_RS25695 - cupin domain-containing protein, at 58,074 to 59,054 _RS25695 ABID97_RS25700: ABID97_RS25700 - LysR substrate-binding domain-containing protein, at 59,167 to 60,084 _RS25700 ABID97_RS25705: ABID97_RS25705 - GNAT family N-acetyltransferase, at 60,065 to 60,949 _RS25705 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1at 58.254 kb on + strand, within ABID97_RS25695at 58.393 kb on - strand, within ABID97_RS25695at 58.585 kb on - strand, within ABID97_RS25695at 59.122 kb on + strandat 59.381 kb on - strand, within ABID97_RS25700at 59.587 kb on + strand, within ABID97_RS25700at 59.588 kb on - strand, within ABID97_RS25700at 59.817 kb on - strand, within ABID97_RS25700at 60.020 kb on + strandat 60.300 kb on - strand, within ABID97_RS25705at 60.577 kb on - strand, within ABID97_RS25705at 61.020 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
remove
58,254 + ABID97_RS25695 0.18 +0.9
58,393 - ABID97_RS25695 0.33 +0.1
58,585 - ABID97_RS25695 0.52 +1.7
59,122 + -2.4
59,381 - ABID97_RS25700 0.23 -1.5
59,587 + ABID97_RS25700 0.46 -0.0
59,588 - ABID97_RS25700 0.46 -0.9
59,817 - ABID97_RS25700 0.71 +0.3
60,020 + +0.1
60,300 - ABID97_RS25705 0.27 +0.1
60,577 - ABID97_RS25705 0.58 +0.6
61,020 - +0.0

Or see this region's nucleotide sequence