Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25660 and ABID97_RS25665 overlap by 4 nucleotides ABID97_RS25665 and ABID97_RS25670 are separated by 103 nucleotides ABID97_RS25670 and ABID97_RS25675 are separated by 196 nucleotides
ABID97_RS25660: ABID97_RS25660 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 51,359 to 52,276
_RS25660
ABID97_RS25665: ABID97_RS25665 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 52,273 to 53,016
_RS25665
ABID97_RS25670: ABID97_RS25670 - sulfite exporter TauE/SafE family protein, at 53,120 to 53,902
_RS25670
ABID97_RS25675: ABID97_RS25675 - beta-1,6-N-acetylglucosaminyltransferase, at 54,099 to 54,983
_RS25675
Position (kb) 53
54 Strain fitness (log2 ratio) -1
0
1 at 53.070 kb on - strand at 53.835 kb on + strand at 53.836 kb on - strand at 53.836 kb on - strand at 54.145 kb on + strand at 54.146 kb on - strand at 54.250 kb on - strand, within ABID97_RS25675 at 54.385 kb on - strand, within ABID97_RS25675 at 54.385 kb on - strand, within ABID97_RS25675 at 54.511 kb on + strand, within ABID97_RS25675 at 54.670 kb on - strand, within ABID97_RS25675 at 54.670 kb on - strand, within ABID97_RS25675 at 54.670 kb on - strand, within ABID97_RS25675 at 54.670 kb on - strand, within ABID97_RS25675 at 54.742 kb on - strand, within ABID97_RS25675 at 54.859 kb on - strand, within ABID97_RS25675
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 53,070 - -0.0 53,835 + +0.1 53,836 - +0.1 53,836 - -1.1 54,145 + +0.5 54,146 - +0.3 54,250 - ABID97_RS25675 0.17 -1.5 54,385 - ABID97_RS25675 0.32 +0.4 54,385 - ABID97_RS25675 0.32 -0.4 54,511 + ABID97_RS25675 0.47 -1.6 54,670 - ABID97_RS25675 0.65 +0.6 54,670 - ABID97_RS25675 0.65 +0.2 54,670 - ABID97_RS25675 0.65 -1.2 54,670 - ABID97_RS25675 0.65 -0.2 54,742 - ABID97_RS25675 0.73 -0.4 54,859 - ABID97_RS25675 0.86 -0.2
Or see this region's nucleotide sequence