Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25525 and ABID97_RS25530 are separated by 387 nucleotides ABID97_RS25530 and ABID97_RS25535 are separated by 63 nucleotides
ABID97_RS25525: ABID97_RS25525 - LacI family DNA-binding transcriptional regulator, at 22,627 to 23,676
_RS25525
ABID97_RS25530: ABID97_RS25530 - cyclase family protein, at 24,064 to 25,026
_RS25530
ABID97_RS25535: ABID97_RS25535 - sugar ABC transporter substrate-binding protein, at 25,090 to 26,211
_RS25535
Position (kb) 24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 23.482 kb on - strand, within ABID97_RS25525 at 23.522 kb on + strand, within ABID97_RS25525 at 23.744 kb on - strand at 23.904 kb on + strand at 24.164 kb on - strand, within ABID97_RS25530 at 24.316 kb on + strand, within ABID97_RS25530 at 24.352 kb on + strand, within ABID97_RS25530 at 24.352 kb on + strand, within ABID97_RS25530 at 24.382 kb on + strand, within ABID97_RS25530 at 24.403 kb on + strand, within ABID97_RS25530 at 24.452 kb on - strand, within ABID97_RS25530 at 24.689 kb on - strand, within ABID97_RS25530 at 24.689 kb on - strand, within ABID97_RS25530 at 24.958 kb on + strand at 25.102 kb on + strand at 25.103 kb on - strand at 25.199 kb on - strand at 25.634 kb on - strand, within ABID97_RS25535 at 25.765 kb on + strand, within ABID97_RS25535 at 25.765 kb on + strand, within ABID97_RS25535 at 25.765 kb on + strand, within ABID97_RS25535 at 25.765 kb on + strand, within ABID97_RS25535 at 25.960 kb on + strand, within ABID97_RS25535
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 23,482 - ABID97_RS25525 0.81 -3.0 23,522 + ABID97_RS25525 0.85 -3.9 23,744 - +0.7 23,904 + +0.3 24,164 - ABID97_RS25530 0.10 +1.9 24,316 + ABID97_RS25530 0.26 +0.6 24,352 + ABID97_RS25530 0.30 -0.4 24,352 + ABID97_RS25530 0.30 +0.4 24,382 + ABID97_RS25530 0.33 -0.0 24,403 + ABID97_RS25530 0.35 +0.6 24,452 - ABID97_RS25530 0.40 +0.4 24,689 - ABID97_RS25530 0.65 -2.5 24,689 - ABID97_RS25530 0.65 -1.5 24,958 + -2.7 25,102 + +0.2 25,103 - -0.9 25,199 - +0.5 25,634 - ABID97_RS25535 0.48 -1.6 25,765 + ABID97_RS25535 0.60 +0.3 25,765 + ABID97_RS25535 0.60 -0.5 25,765 + ABID97_RS25535 0.60 +0.9 25,765 + ABID97_RS25535 0.60 +0.8 25,960 + ABID97_RS25535 0.78 +0.9
Or see this region's nucleotide sequence