Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24485 and ABID97_RS24490 overlap by 1 nucleotides ABID97_RS24490 and ABID97_RS24495 are separated by 74 nucleotides
ABID97_RS24485: ABID97_RS24485 - formyl-CoA transferase, at 5,068,497 to 5,069,744
_RS24485
ABID97_RS24490: ABID97_RS24490 - PAS domain S-box protein, at 5,069,744 to 5,070,181
_RS24490
ABID97_RS24495: ABID97_RS24495 - formyl-CoA transferase, at 5,070,256 to 5,071,527
_RS24495
Position (kb) 5069
5070
5071 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5068.756 kb on + strand, within ABID97_RS24485 at 5068.757 kb on - strand, within ABID97_RS24485 at 5068.864 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.948 kb on + strand, within ABID97_RS24485 at 5068.949 kb on - strand, within ABID97_RS24485 at 5069.060 kb on - strand, within ABID97_RS24485 at 5069.069 kb on - strand, within ABID97_RS24485 at 5069.195 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.350 kb on + strand, within ABID97_RS24485 at 5069.351 kb on - strand, within ABID97_RS24485 at 5069.569 kb on + strand, within ABID97_RS24485 at 5069.569 kb on + strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.953 kb on - strand, within ABID97_RS24490 at 5069.986 kb on - strand, within ABID97_RS24490 at 5070.186 kb on - strand at 5070.186 kb on - strand at 5070.407 kb on + strand, within ABID97_RS24495 at 5070.408 kb on - strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.701 kb on + strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495 at 5070.827 kb on + strand, within ABID97_RS24495 at 5070.828 kb on - strand, within ABID97_RS24495 at 5070.837 kb on - strand, within ABID97_RS24495 at 5070.837 kb on - strand, within ABID97_RS24495 at 5071.127 kb on + strand, within ABID97_RS24495
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 5,068,756 + ABID97_RS24485 0.21 -0.2 5,068,757 - ABID97_RS24485 0.21 -4.1 5,068,864 + ABID97_RS24485 0.29 -1.9 5,068,942 + ABID97_RS24485 0.36 -1.7 5,068,942 + ABID97_RS24485 0.36 -0.6 5,068,942 + ABID97_RS24485 0.36 -2.0 5,068,943 - ABID97_RS24485 0.36 -0.9 5,068,943 - ABID97_RS24485 0.36 -1.5 5,068,943 - ABID97_RS24485 0.36 -2.7 5,068,943 - ABID97_RS24485 0.36 -2.8 5,068,943 - ABID97_RS24485 0.36 -2.7 5,068,948 + ABID97_RS24485 0.36 -1.8 5,068,949 - ABID97_RS24485 0.36 -3.9 5,069,060 - ABID97_RS24485 0.45 -2.9 5,069,069 - ABID97_RS24485 0.46 -3.8 5,069,195 - ABID97_RS24485 0.56 -2.7 5,069,333 - ABID97_RS24485 0.67 +0.5 5,069,333 - ABID97_RS24485 0.67 +0.1 5,069,333 - ABID97_RS24485 0.67 -2.6 5,069,350 + ABID97_RS24485 0.68 -0.9 5,069,351 - ABID97_RS24485 0.68 -2.8 5,069,569 + ABID97_RS24485 0.86 +0.0 5,069,569 + ABID97_RS24485 0.86 -1.1 5,069,570 - ABID97_RS24485 0.86 +0.1 5,069,570 - ABID97_RS24485 0.86 -1.3 5,069,570 - ABID97_RS24485 0.86 +0.7 5,069,952 + ABID97_RS24490 0.47 -0.4 5,069,952 + ABID97_RS24490 0.47 +0.2 5,069,952 + ABID97_RS24490 0.47 -0.2 5,069,953 - ABID97_RS24490 0.48 -3.1 5,069,986 - ABID97_RS24490 0.55 +0.1 5,070,186 - +0.4 5,070,186 - -2.1 5,070,407 + ABID97_RS24495 0.12 -0.4 5,070,408 - ABID97_RS24495 0.12 +1.1 5,070,623 + ABID97_RS24495 0.29 -1.9 5,070,623 + ABID97_RS24495 0.29 -1.7 5,070,623 + ABID97_RS24495 0.29 -2.6 5,070,701 + ABID97_RS24495 0.35 -1.1 5,070,702 - ABID97_RS24495 0.35 -0.5 5,070,702 - ABID97_RS24495 0.35 -0.7 5,070,702 - ABID97_RS24495 0.35 -0.4 5,070,707 + ABID97_RS24495 0.35 +0.0 5,070,707 + ABID97_RS24495 0.35 +0.4 5,070,827 + ABID97_RS24495 0.45 -0.1 5,070,828 - ABID97_RS24495 0.45 -1.6 5,070,837 - ABID97_RS24495 0.46 -1.6 5,070,837 - ABID97_RS24495 0.46 -1.6 5,071,127 + ABID97_RS24495 0.68 +0.6
Or see this region's nucleotide sequence