Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24415

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24410 and ABID97_RS24415 are separated by 72 nucleotidesABID97_RS24415 and ABID97_RS24420 are separated by 14 nucleotides ABID97_RS24410: ABID97_RS24410 - VWA domain-containing protein, at 5,050,398 to 5,051,585 _RS24410 ABID97_RS24415: ABID97_RS24415 - BamA/TamA family outer membrane protein, at 5,051,658 to 5,053,586 _RS24415 ABID97_RS24420: ABID97_RS24420 - translocation/assembly module TamB domain-containing protein, at 5,053,601 to 5,057,710 _RS24420 Position (kb) 5051 5052 5053 5054Strain fitness (log2 ratio) -2 -1 0 1 2at 5050.843 kb on - strand, within ABID97_RS24410at 5050.917 kb on + strand, within ABID97_RS24410at 5050.927 kb on - strand, within ABID97_RS24410at 5051.208 kb on + strand, within ABID97_RS24410at 5051.211 kb on + strand, within ABID97_RS24410at 5051.229 kb on + strand, within ABID97_RS24410at 5051.230 kb on - strand, within ABID97_RS24410at 5051.302 kb on - strand, within ABID97_RS24410at 5051.302 kb on - strand, within ABID97_RS24410at 5051.302 kb on - strand, within ABID97_RS24410at 5051.302 kb on - strand, within ABID97_RS24410at 5051.313 kb on + strand, within ABID97_RS24410at 5051.314 kb on - strand, within ABID97_RS24410at 5051.353 kb on - strand, within ABID97_RS24410at 5051.386 kb on - strand, within ABID97_RS24410at 5051.533 kb on - strandat 5051.583 kb on + strandat 5051.583 kb on + strandat 5052.021 kb on + strand, within ABID97_RS24415at 5052.021 kb on + strand, within ABID97_RS24415at 5052.144 kb on + strand, within ABID97_RS24415at 5052.145 kb on - strand, within ABID97_RS24415at 5052.145 kb on - strand, within ABID97_RS24415at 5052.201 kb on - strand, within ABID97_RS24415at 5052.369 kb on + strand, within ABID97_RS24415at 5052.370 kb on - strand, within ABID97_RS24415at 5052.427 kb on - strand, within ABID97_RS24415at 5052.427 kb on - strand, within ABID97_RS24415at 5052.427 kb on - strand, within ABID97_RS24415at 5052.477 kb on + strand, within ABID97_RS24415at 5052.478 kb on - strand, within ABID97_RS24415at 5052.478 kb on - strand, within ABID97_RS24415at 5052.529 kb on - strand, within ABID97_RS24415at 5052.532 kb on - strand, within ABID97_RS24415at 5052.532 kb on - strand, within ABID97_RS24415at 5052.532 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.841 kb on - strand, within ABID97_RS24415at 5052.906 kb on + strand, within ABID97_RS24415at 5052.907 kb on - strand, within ABID97_RS24415at 5052.907 kb on - strand, within ABID97_RS24415at 5052.907 kb on - strand, within ABID97_RS24415at 5052.924 kb on + strand, within ABID97_RS24415at 5053.101 kb on + strand, within ABID97_RS24415at 5053.101 kb on + strand, within ABID97_RS24415at 5053.101 kb on + strand, within ABID97_RS24415at 5053.102 kb on - strand, within ABID97_RS24415at 5053.102 kb on - strand, within ABID97_RS24415at 5053.102 kb on - strand, within ABID97_RS24415at 5053.287 kb on + strand, within ABID97_RS24415at 5053.339 kb on - strand, within ABID97_RS24415at 5053.531 kb on - strandat 5053.796 kb on + strandat 5053.797 kb on - strandat 5053.797 kb on - strandat 5054.018 kb on - strand, within ABID97_RS24420at 5054.138 kb on + strand, within ABID97_RS24420at 5054.202 kb on - strand, within ABID97_RS24420

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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5,050,843 - ABID97_RS24410 0.37 +0.2
5,050,917 + ABID97_RS24410 0.44 +0.6
5,050,927 - ABID97_RS24410 0.45 +0.8
5,051,208 + ABID97_RS24410 0.68 -0.2
5,051,211 + ABID97_RS24410 0.68 +0.2
5,051,229 + ABID97_RS24410 0.70 +0.4
5,051,230 - ABID97_RS24410 0.70 -2.0
5,051,302 - ABID97_RS24410 0.76 -0.2
5,051,302 - ABID97_RS24410 0.76 +0.5
5,051,302 - ABID97_RS24410 0.76 +0.5
5,051,302 - ABID97_RS24410 0.76 +0.3
5,051,313 + ABID97_RS24410 0.77 +2.3
5,051,314 - ABID97_RS24410 0.77 -2.3
5,051,353 - ABID97_RS24410 0.80 +0.7
5,051,386 - ABID97_RS24410 0.83 -0.2
5,051,533 - +0.2
5,051,583 + +0.5
5,051,583 + +0.5
5,052,021 + ABID97_RS24415 0.19 +1.3
5,052,021 + ABID97_RS24415 0.19 +0.1
5,052,144 + ABID97_RS24415 0.25 -0.1
5,052,145 - ABID97_RS24415 0.25 -0.2
5,052,145 - ABID97_RS24415 0.25 +1.8
5,052,201 - ABID97_RS24415 0.28 -0.3
5,052,369 + ABID97_RS24415 0.37 -0.3
5,052,370 - ABID97_RS24415 0.37 +0.2
5,052,427 - ABID97_RS24415 0.40 +1.4
5,052,427 - ABID97_RS24415 0.40 +0.8
5,052,427 - ABID97_RS24415 0.40 -0.1
5,052,477 + ABID97_RS24415 0.42 +0.7
5,052,478 - ABID97_RS24415 0.43 -1.6
5,052,478 - ABID97_RS24415 0.43 +0.0
5,052,529 - ABID97_RS24415 0.45 +0.3
5,052,532 - ABID97_RS24415 0.45 +1.0
5,052,532 - ABID97_RS24415 0.45 -2.7
5,052,532 - ABID97_RS24415 0.45 +0.0
5,052,841 - ABID97_RS24415 0.61 +0.7
5,052,841 - ABID97_RS24415 0.61 +0.3
5,052,841 - ABID97_RS24415 0.61 -0.5
5,052,841 - ABID97_RS24415 0.61 +1.0
5,052,841 - ABID97_RS24415 0.61 +0.1
5,052,841 - ABID97_RS24415 0.61 -0.1
5,052,906 + ABID97_RS24415 0.65 -0.6
5,052,907 - ABID97_RS24415 0.65 +0.1
5,052,907 - ABID97_RS24415 0.65 +0.4
5,052,907 - ABID97_RS24415 0.65 +0.4
5,052,924 + ABID97_RS24415 0.66 -0.9
5,053,101 + ABID97_RS24415 0.75 -0.7
5,053,101 + ABID97_RS24415 0.75 -1.5
5,053,101 + ABID97_RS24415 0.75 +1.0
5,053,102 - ABID97_RS24415 0.75 -0.8
5,053,102 - ABID97_RS24415 0.75 +1.1
5,053,102 - ABID97_RS24415 0.75 -2.0
5,053,287 + ABID97_RS24415 0.84 -0.2
5,053,339 - ABID97_RS24415 0.87 -0.9
5,053,531 - +0.7
5,053,796 + -0.7
5,053,797 - -1.5
5,053,797 - +2.3
5,054,018 - ABID97_RS24420 0.10 +0.2
5,054,138 + ABID97_RS24420 0.13 +1.1
5,054,202 - ABID97_RS24420 0.15 -1.5

Or see this region's nucleotide sequence