Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23055 and ABID97_RS23060 overlap by 4 nucleotides ABID97_RS23060 and ABID97_RS23065 are separated by 197 nucleotides
ABID97_RS23055: ABID97_RS23055 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,772,075 to 4,773,130
_RS23055
ABID97_RS23060: ABID97_RS23060 - Nif3-like dinuclear metal center hexameric protein, at 4,773,127 to 4,773,900
_RS23060
ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258
_RS23065
Position (kb) 4773
4774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4772.150 kb on + strand at 4772.150 kb on + strand at 4772.150 kb on + strand at 4772.150 kb on + strand at 4772.151 kb on - strand at 4772.151 kb on - strand at 4772.151 kb on - strand at 4772.151 kb on - strand at 4772.151 kb on - strand at 4772.151 kb on - strand at 4772.153 kb on - strand at 4772.235 kb on + strand, within ABID97_RS23055 at 4772.235 kb on + strand, within ABID97_RS23055 at 4772.235 kb on + strand, within ABID97_RS23055 at 4772.236 kb on - strand, within ABID97_RS23055 at 4772.236 kb on - strand, within ABID97_RS23055 at 4772.236 kb on - strand, within ABID97_RS23055 at 4772.265 kb on + strand, within ABID97_RS23055 at 4772.265 kb on + strand, within ABID97_RS23055 at 4772.265 kb on + strand, within ABID97_RS23055 at 4772.265 kb on + strand, within ABID97_RS23055 at 4772.266 kb on - strand, within ABID97_RS23055 at 4772.266 kb on - strand, within ABID97_RS23055 at 4772.266 kb on - strand, within ABID97_RS23055 at 4772.266 kb on - strand, within ABID97_RS23055 at 4772.266 kb on - strand, within ABID97_RS23055 at 4772.544 kb on + strand, within ABID97_RS23055 at 4772.544 kb on + strand, within ABID97_RS23055 at 4772.544 kb on + strand, within ABID97_RS23055 at 4772.645 kb on + strand, within ABID97_RS23055 at 4772.646 kb on - strand, within ABID97_RS23055 at 4772.646 kb on - strand, within ABID97_RS23055 at 4773.209 kb on + strand, within ABID97_RS23060 at 4773.209 kb on + strand, within ABID97_RS23060 at 4773.266 kb on + strand, within ABID97_RS23060 at 4773.266 kb on + strand, within ABID97_RS23060 at 4773.338 kb on + strand, within ABID97_RS23060 at 4773.338 kb on + strand, within ABID97_RS23060 at 4773.608 kb on + strand, within ABID97_RS23060 at 4773.608 kb on + strand, within ABID97_RS23060 at 4773.609 kb on - strand, within ABID97_RS23060 at 4773.831 kb on - strand at 4773.831 kb on - strand at 4773.988 kb on + strand at 4773.988 kb on + strand at 4773.988 kb on + strand at 4773.989 kb on - strand at 4774.091 kb on + strand at 4774.092 kb on - strand at 4774.092 kb on - strand at 4774.107 kb on - strand at 4774.107 kb on - strand at 4774.107 kb on - strand at 4774.152 kb on + strand at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.830 kb on + strand, within ABID97_RS23065 at 4774.831 kb on - strand, within ABID97_RS23065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,772,150 + +1.2 4,772,150 + +0.1 4,772,150 + +1.0 4,772,150 + +0.9 4,772,151 - +0.9 4,772,151 - +0.2 4,772,151 - -0.2 4,772,151 - +1.1 4,772,151 - -1.3 4,772,151 - +0.5 4,772,153 - +0.7 4,772,235 + ABID97_RS23055 0.15 +1.0 4,772,235 + ABID97_RS23055 0.15 +1.0 4,772,235 + ABID97_RS23055 0.15 +0.9 4,772,236 - ABID97_RS23055 0.15 +0.1 4,772,236 - ABID97_RS23055 0.15 -1.2 4,772,236 - ABID97_RS23055 0.15 -0.7 4,772,265 + ABID97_RS23055 0.18 +1.5 4,772,265 + ABID97_RS23055 0.18 +0.8 4,772,265 + ABID97_RS23055 0.18 +0.9 4,772,265 + ABID97_RS23055 0.18 -0.1 4,772,266 - ABID97_RS23055 0.18 +1.1 4,772,266 - ABID97_RS23055 0.18 +0.5 4,772,266 - ABID97_RS23055 0.18 +1.1 4,772,266 - ABID97_RS23055 0.18 +1.1 4,772,266 - ABID97_RS23055 0.18 -1.9 4,772,544 + ABID97_RS23055 0.44 +0.2 4,772,544 + ABID97_RS23055 0.44 +0.1 4,772,544 + ABID97_RS23055 0.44 +0.8 4,772,645 + ABID97_RS23055 0.54 -0.5 4,772,646 - ABID97_RS23055 0.54 +0.9 4,772,646 - ABID97_RS23055 0.54 +1.5 4,773,209 + ABID97_RS23060 0.11 +0.3 4,773,209 + ABID97_RS23060 0.11 +1.9 4,773,266 + ABID97_RS23060 0.18 +1.2 4,773,266 + ABID97_RS23060 0.18 -1.5 4,773,338 + ABID97_RS23060 0.27 +0.2 4,773,338 + ABID97_RS23060 0.27 +0.3 4,773,608 + ABID97_RS23060 0.62 +0.6 4,773,608 + ABID97_RS23060 0.62 +0.3 4,773,609 - ABID97_RS23060 0.62 -0.2 4,773,831 - +1.2 4,773,831 - +0.2 4,773,988 + +1.1 4,773,988 + +0.5 4,773,988 + +0.2 4,773,989 - +0.8 4,774,091 + -0.9 4,774,092 - +0.2 4,774,092 - -1.9 4,774,107 - -1.2 4,774,107 - -3.1 4,774,107 - -1.9 4,774,152 + +4.9 4,774,443 + ABID97_RS23065 0.30 -2.0 4,774,443 + ABID97_RS23065 0.30 -1.3 4,774,444 - ABID97_RS23065 0.30 -4.3 4,774,444 - ABID97_RS23065 0.30 -3.2 4,774,444 - ABID97_RS23065 0.30 -1.8 4,774,830 + ABID97_RS23065 0.63 -1.1 4,774,831 - ABID97_RS23065 0.63 +1.1
Or see this region's nucleotide sequence