Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22385 and ABID97_RS22390 are separated by 12 nucleotides ABID97_RS22390 and ABID97_RS22395 are separated by 333 nucleotides
ABID97_RS22385: ABID97_RS22385 - D-amino acid dehydrogenase, at 4,637,207 to 4,638,571
_RS22385
ABID97_RS22390: ABID97_RS22390 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 4,638,584 to 4,639,666
_RS22390
ABID97_RS22395: ABID97_RS22395 - ABC transporter substrate-binding protein, at 4,640,000 to 4,641,034
_RS22395
Position (kb) 4638
4639
4640 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4637.759 kb on + strand, within ABID97_RS22385 at 4637.760 kb on - strand, within ABID97_RS22385 at 4638.018 kb on - strand, within ABID97_RS22385 at 4638.516 kb on - strand at 4638.516 kb on - strand at 4638.572 kb on + strand at 4638.573 kb on - strand at 4638.659 kb on + strand at 4638.659 kb on + strand at 4638.660 kb on - strand at 4638.660 kb on - strand at 4638.715 kb on - strand, within ABID97_RS22390 at 4638.715 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4639.095 kb on + strand, within ABID97_RS22390 at 4639.096 kb on - strand, within ABID97_RS22390 at 4639.096 kb on - strand, within ABID97_RS22390 at 4639.212 kb on + strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.341 kb on + strand, within ABID97_RS22390 at 4639.342 kb on - strand, within ABID97_RS22390 at 4639.371 kb on + strand, within ABID97_RS22390 at 4639.407 kb on + strand, within ABID97_RS22390 at 4639.407 kb on + strand, within ABID97_RS22390 at 4639.422 kb on + strand, within ABID97_RS22390 at 4639.746 kb on + strand at 4639.747 kb on - strand at 4639.747 kb on - strand at 4639.747 kb on - strand at 4639.887 kb on - strand at 4639.887 kb on - strand at 4639.887 kb on - strand at 4640.165 kb on + strand, within ABID97_RS22395 at 4640.168 kb on + strand, within ABID97_RS22395 at 4640.168 kb on + strand, within ABID97_RS22395 at 4640.169 kb on - strand, within ABID97_RS22395 at 4640.337 kb on - strand, within ABID97_RS22395 at 4640.337 kb on - strand, within ABID97_RS22395 at 4640.339 kb on + strand, within ABID97_RS22395 at 4640.339 kb on + strand, within ABID97_RS22395 at 4640.339 kb on + strand, within ABID97_RS22395 at 4640.339 kb on + strand, within ABID97_RS22395 at 4640.570 kb on + strand, within ABID97_RS22395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,637,759 + ABID97_RS22385 0.40 +1.0 4,637,760 - ABID97_RS22385 0.41 +5.2 4,638,018 - ABID97_RS22385 0.59 +0.6 4,638,516 - +0.0 4,638,516 - +0.8 4,638,572 + -1.8 4,638,573 - +0.1 4,638,659 + +0.8 4,638,659 + -0.5 4,638,660 - -1.3 4,638,660 - +1.4 4,638,715 - ABID97_RS22390 0.12 +0.8 4,638,715 - ABID97_RS22390 0.12 -0.0 4,638,970 - ABID97_RS22390 0.36 +0.3 4,638,970 - ABID97_RS22390 0.36 +0.7 4,638,970 - ABID97_RS22390 0.36 +2.4 4,639,095 + ABID97_RS22390 0.47 -1.8 4,639,096 - ABID97_RS22390 0.47 -0.9 4,639,096 - ABID97_RS22390 0.47 -1.5 4,639,212 + ABID97_RS22390 0.58 +0.5 4,639,213 - ABID97_RS22390 0.58 +0.0 4,639,213 - ABID97_RS22390 0.58 -1.2 4,639,213 - ABID97_RS22390 0.58 +0.9 4,639,341 + ABID97_RS22390 0.70 -0.5 4,639,342 - ABID97_RS22390 0.70 +0.6 4,639,371 + ABID97_RS22390 0.73 +0.5 4,639,407 + ABID97_RS22390 0.76 -0.2 4,639,407 + ABID97_RS22390 0.76 -0.7 4,639,422 + ABID97_RS22390 0.77 +0.9 4,639,746 + +1.1 4,639,747 - +1.2 4,639,747 - +0.8 4,639,747 - -0.8 4,639,887 - -0.9 4,639,887 - +0.1 4,639,887 - +1.3 4,640,165 + ABID97_RS22395 0.16 -0.2 4,640,168 + ABID97_RS22395 0.16 -0.3 4,640,168 + ABID97_RS22395 0.16 -1.9 4,640,169 - ABID97_RS22395 0.16 -0.9 4,640,337 - ABID97_RS22395 0.33 -1.7 4,640,337 - ABID97_RS22395 0.33 +0.3 4,640,339 + ABID97_RS22395 0.33 +1.1 4,640,339 + ABID97_RS22395 0.33 -0.2 4,640,339 + ABID97_RS22395 0.33 +0.1 4,640,339 + ABID97_RS22395 0.33 -2.0 4,640,570 + ABID97_RS22395 0.55 -1.0
Or see this region's nucleotide sequence