Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21970

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21965 and ABID97_RS21970 are separated by 37 nucleotidesABID97_RS21970 and ABID97_RS21975 are separated by 1 nucleotidesABID97_RS21975 and ABID97_RS21980 overlap by 7 nucleotides ABID97_RS21965: ABID97_RS21965 - ABC transporter substrate-binding protein, at 4,544,073 to 4,545,053 _RS21965 ABID97_RS21970: ABID97_RS21970 - cytochrome c, at 4,545,091 to 4,546,251 _RS21970 ABID97_RS21975: ABID97_RS21975 - ABC transporter ATP-binding protein, at 4,546,253 to 4,547,041 _RS21975 ABID97_RS21980: ABID97_RS21980 - ABC transporter permease, at 4,547,035 to 4,548,117 _RS21980 Position (kb) 4545 4546 4547Strain fitness (log2 ratio) -1 0 1at 4544.287 kb on + strand, within ABID97_RS21965at 4544.395 kb on + strand, within ABID97_RS21965at 4544.702 kb on - strand, within ABID97_RS21965at 4545.602 kb on + strand, within ABID97_RS21970at 4545.603 kb on - strand, within ABID97_RS21970at 4545.840 kb on - strand, within ABID97_RS21970at 4547.141 kb on + strandat 4547.142 kb on - strandat 4547.142 kb on - strandat 4547.184 kb on - strand, within ABID97_RS21980

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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4,544,287 + ABID97_RS21965 0.22 -0.4
4,544,395 + ABID97_RS21965 0.33 -0.5
4,544,702 - ABID97_RS21965 0.64 +0.2
4,545,602 + ABID97_RS21970 0.44 -1.7
4,545,603 - ABID97_RS21970 0.44 -0.4
4,545,840 - ABID97_RS21970 0.65 -0.8
4,547,141 + +0.6
4,547,142 - +0.1
4,547,142 - -0.3
4,547,184 - ABID97_RS21980 0.14 -0.7

Or see this region's nucleotide sequence