Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21945 and ABID97_RS21950 are separated by 23 nucleotides ABID97_RS21950 and ABID97_RS21955 are separated by 6 nucleotides ABID97_RS21955 and ABID97_RS21960 are separated by 115 nucleotides
ABID97_RS21945: ABID97_RS21945 - hemolysin family protein, at 4,539,567 to 4,540,877
_RS21945
ABID97_RS21950: ABID97_RS21950 - symmetrical bis(5'-nucleosyl)-tetraphosphatase, at 4,540,901 to 4,541,752
_RS21950
ABID97_RS21955: ABID97_RS21955 - GNAT family protein, at 4,541,759 to 4,542,475
_RS21955
ABID97_RS21960: ABID97_RS21960 - PLP-dependent aminotransferase family protein, at 4,542,591 to 4,544,072
_RS21960
Position (kb) 4541
4542
4543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4540.910 kb on + strand at 4540.910 kb on + strand at 4540.910 kb on + strand at 4541.064 kb on - strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.373 kb on - strand, within ABID97_RS21950 at 4541.916 kb on + strand, within ABID97_RS21955 at 4541.916 kb on + strand, within ABID97_RS21955 at 4542.058 kb on - strand, within ABID97_RS21955 at 4542.284 kb on + strand, within ABID97_RS21955 at 4542.285 kb on + strand at 4542.286 kb on - strand, within ABID97_RS21955 at 4542.286 kb on - strand, within ABID97_RS21955 at 4542.286 kb on - strand, within ABID97_RS21955 at 4542.286 kb on - strand, within ABID97_RS21955 at 4542.318 kb on + strand, within ABID97_RS21955 at 4542.318 kb on + strand, within ABID97_RS21955 at 4542.376 kb on - strand, within ABID97_RS21955 at 4542.454 kb on - strand at 4542.520 kb on + strand at 4542.798 kb on + strand, within ABID97_RS21960 at 4542.798 kb on + strand, within ABID97_RS21960 at 4542.823 kb on - strand, within ABID97_RS21960 at 4543.377 kb on + strand, within ABID97_RS21960 at 4543.378 kb on - strand, within ABID97_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,540,910 + +0.9 4,540,910 + +0.9 4,540,910 + +1.9 4,541,064 - ABID97_RS21950 0.19 -1.7 4,541,372 + ABID97_RS21950 0.55 -0.1 4,541,372 + ABID97_RS21950 0.55 -2.8 4,541,372 + ABID97_RS21950 0.55 -0.9 4,541,373 - ABID97_RS21950 0.55 -2.2 4,541,916 + ABID97_RS21955 0.22 -2.2 4,541,916 + ABID97_RS21955 0.22 -0.2 4,542,058 - ABID97_RS21955 0.42 +0.1 4,542,284 + ABID97_RS21955 0.73 -0.9 4,542,285 + -0.4 4,542,286 - ABID97_RS21955 0.74 -0.3 4,542,286 - ABID97_RS21955 0.74 -0.2 4,542,286 - ABID97_RS21955 0.74 -1.2 4,542,286 - ABID97_RS21955 0.74 -0.0 4,542,318 + ABID97_RS21955 0.78 -0.3 4,542,318 + ABID97_RS21955 0.78 +0.4 4,542,376 - ABID97_RS21955 0.86 -0.5 4,542,454 - -0.4 4,542,520 + +0.5 4,542,798 + ABID97_RS21960 0.14 +0.7 4,542,798 + ABID97_RS21960 0.14 +1.2 4,542,823 - ABID97_RS21960 0.16 -0.0 4,543,377 + ABID97_RS21960 0.53 +1.1 4,543,378 - ABID97_RS21960 0.53 -2.0
Or see this region's nucleotide sequence