Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21650 and ABID97_RS21655 are separated by 57 nucleotides ABID97_RS21655 and ABID97_RS21660 are separated by 58 nucleotides ABID97_RS21660 and ABID97_RS21665 are separated by 132 nucleotides
ABID97_RS21650: ABID97_RS21650 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 4,479,311 to 4,480,618
_RS21650
ABID97_RS21655: ABID97_RS21655 - ArsC family reductase, at 4,480,676 to 4,481,035
_RS21655
ABID97_RS21660: ABID97_RS21660 - hypothetical protein, at 4,481,094 to 4,481,714
_RS21660
ABID97_RS21665: ABID97_RS21665 - pyrimidine/purine nucleoside phosphorylase, at 4,481,847 to 4,482,173
_RS21665
Position (kb) 4480
4481
4482 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4480.657 kb on - strand at 4480.985 kb on - strand, within ABID97_RS21655 at 4480.985 kb on - strand, within ABID97_RS21655 at 4481.033 kb on + strand at 4481.033 kb on + strand at 4481.033 kb on + strand at 4481.247 kb on + strand, within ABID97_RS21660 at 4481.248 kb on - strand, within ABID97_RS21660 at 4481.260 kb on - strand, within ABID97_RS21660 at 4481.260 kb on - strand, within ABID97_RS21660 at 4481.260 kb on - strand, within ABID97_RS21660 at 4481.280 kb on + strand, within ABID97_RS21660 at 4481.338 kb on - strand, within ABID97_RS21660 at 4481.427 kb on + strand, within ABID97_RS21660 at 4481.428 kb on - strand, within ABID97_RS21660 at 4481.451 kb on + strand, within ABID97_RS21660 at 4481.469 kb on + strand, within ABID97_RS21660 at 4481.551 kb on - strand, within ABID97_RS21660 at 4481.551 kb on - strand, within ABID97_RS21660 at 4481.551 kb on - strand, within ABID97_RS21660 at 4481.571 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.601 kb on + strand, within ABID97_RS21660 at 4481.602 kb on - strand, within ABID97_RS21660 at 4481.602 kb on - strand, within ABID97_RS21660 at 4481.602 kb on - strand, within ABID97_RS21660 at 4481.602 kb on - strand, within ABID97_RS21660 at 4481.602 kb on - strand, within ABID97_RS21660 at 4481.619 kb on + strand, within ABID97_RS21660 at 4481.619 kb on + strand, within ABID97_RS21660 at 4481.619 kb on + strand, within ABID97_RS21660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,480,657 - -0.2 4,480,985 - ABID97_RS21655 0.86 -0.1 4,480,985 - ABID97_RS21655 0.86 +1.2 4,481,033 + +0.0 4,481,033 + +0.3 4,481,033 + -1.2 4,481,247 + ABID97_RS21660 0.25 -0.1 4,481,248 - ABID97_RS21660 0.25 -0.2 4,481,260 - ABID97_RS21660 0.27 +0.4 4,481,260 - ABID97_RS21660 0.27 -0.1 4,481,260 - ABID97_RS21660 0.27 +2.7 4,481,280 + ABID97_RS21660 0.30 +0.5 4,481,338 - ABID97_RS21660 0.39 -2.2 4,481,427 + ABID97_RS21660 0.54 +1.5 4,481,428 - ABID97_RS21660 0.54 -1.4 4,481,451 + ABID97_RS21660 0.57 +0.5 4,481,469 + ABID97_RS21660 0.60 +1.6 4,481,551 - ABID97_RS21660 0.74 -0.3 4,481,551 - ABID97_RS21660 0.74 +0.6 4,481,551 - ABID97_RS21660 0.74 +0.1 4,481,571 + ABID97_RS21660 0.77 +1.0 4,481,601 + ABID97_RS21660 0.82 +0.5 4,481,601 + ABID97_RS21660 0.82 +1.2 4,481,601 + ABID97_RS21660 0.82 -0.4 4,481,601 + ABID97_RS21660 0.82 -2.2 4,481,601 + ABID97_RS21660 0.82 +0.9 4,481,601 + ABID97_RS21660 0.82 +0.1 4,481,601 + ABID97_RS21660 0.82 -2.0 4,481,601 + ABID97_RS21660 0.82 -0.5 4,481,601 + ABID97_RS21660 0.82 +0.9 4,481,602 - ABID97_RS21660 0.82 +1.5 4,481,602 - ABID97_RS21660 0.82 +0.6 4,481,602 - ABID97_RS21660 0.82 -0.1 4,481,602 - ABID97_RS21660 0.82 +0.1 4,481,602 - ABID97_RS21660 0.82 +1.1 4,481,619 + ABID97_RS21660 0.85 +1.2 4,481,619 + ABID97_RS21660 0.85 +0.3 4,481,619 + ABID97_RS21660 0.85 +3.4
Or see this region's nucleotide sequence