Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20535 and ABID97_RS20540 are separated by 121 nucleotides ABID97_RS20540 and ABID97_RS20545 are separated by 190 nucleotides ABID97_RS20545 and ABID97_RS20550 overlap by 65 nucleotides
ABID97_RS20535: ABID97_RS20535 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,238,224 to 4,239,504
_RS20535
ABID97_RS20540: ABID97_RS20540 - Hsp20/alpha crystallin family protein, at 4,239,626 to 4,239,997
_RS20540
ABID97_RS20545: ABID97_RS20545 - alpha/beta hydrolase-fold protein, at 4,240,188 to 4,240,946
_RS20545
ABID97_RS20550: ABID97_RS20550 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 4,240,882 to 4,241,943
_RS20550
Position (kb) 4239
4240 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4238.688 kb on - strand, within ABID97_RS20535 at 4238.688 kb on - strand, within ABID97_RS20535 at 4238.697 kb on - strand, within ABID97_RS20535 at 4238.811 kb on - strand, within ABID97_RS20535 at 4238.811 kb on - strand, within ABID97_RS20535 at 4238.931 kb on - strand, within ABID97_RS20535 at 4238.931 kb on - strand, within ABID97_RS20535 at 4238.948 kb on + strand, within ABID97_RS20535 at 4238.948 kb on + strand, within ABID97_RS20535 at 4238.949 kb on - strand, within ABID97_RS20535 at 4239.251 kb on + strand, within ABID97_RS20535 at 4239.531 kb on + strand at 4239.531 kb on + strand at 4239.532 kb on - strand at 4239.532 kb on - strand at 4239.578 kb on - strand at 4240.061 kb on + strand at 4240.071 kb on - strand at 4240.260 kb on + strand at 4240.359 kb on + strand, within ABID97_RS20545 at 4240.359 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.365 kb on + strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.366 kb on - strand, within ABID97_RS20545 at 4240.428 kb on + strand, within ABID97_RS20545 at 4240.428 kb on + strand, within ABID97_RS20545 at 4240.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,238,688 - ABID97_RS20535 0.36 -0.2 4,238,688 - ABID97_RS20535 0.36 +1.2 4,238,697 - ABID97_RS20535 0.37 +1.2 4,238,811 - ABID97_RS20535 0.46 +1.7 4,238,811 - ABID97_RS20535 0.46 -0.3 4,238,931 - ABID97_RS20535 0.55 -0.1 4,238,931 - ABID97_RS20535 0.55 +0.8 4,238,948 + ABID97_RS20535 0.57 +0.5 4,238,948 + ABID97_RS20535 0.57 -0.1 4,238,949 - ABID97_RS20535 0.57 +0.0 4,239,251 + ABID97_RS20535 0.80 +4.0 4,239,531 + -0.8 4,239,531 + +1.5 4,239,532 - -1.4 4,239,532 - +1.1 4,239,578 - +0.0 4,240,061 + -0.4 4,240,071 - -1.9 4,240,260 + +0.7 4,240,359 + ABID97_RS20545 0.23 +1.4 4,240,359 + ABID97_RS20545 0.23 +0.5 4,240,365 + ABID97_RS20545 0.23 +1.4 4,240,365 + ABID97_RS20545 0.23 +0.3 4,240,365 + ABID97_RS20545 0.23 -0.6 4,240,366 - ABID97_RS20545 0.23 -1.5 4,240,366 - ABID97_RS20545 0.23 +1.6 4,240,366 - ABID97_RS20545 0.23 -2.1 4,240,428 + ABID97_RS20545 0.32 +1.0 4,240,428 + ABID97_RS20545 0.32 +0.9 4,240,884 - -0.5
Or see this region's nucleotide sequence