Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19965 and ABID97_RS19970 are separated by 26 nucleotides ABID97_RS19970 and ABID97_RS19975 are separated by 13 nucleotides ABID97_RS19975 and ABID97_RS19980 are separated by 186 nucleotides
ABID97_RS19965: ABID97_RS19965 - glycerol kinase GlpK, at 4,122,061 to 4,123,554
_RS19965
ABID97_RS19970: ABID97_RS19970 - hypothetical protein, at 4,123,581 to 4,124,225
_RS19970
ABID97_RS19975: ABID97_RS19975 - hypothetical protein, at 4,124,239 to 4,125,114
_RS19975
ABID97_RS19980: ABID97_RS19980 - alpha-E domain-containing protein, at 4,125,301 to 4,126,257
_RS19980
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -2
-1
0
1 at 4123.356 kb on - strand, within ABID97_RS19965 at 4123.424 kb on - strand at 4123.619 kb on - strand at 4123.619 kb on - strand at 4123.619 kb on - strand at 4123.694 kb on - strand, within ABID97_RS19970 at 4123.711 kb on + strand, within ABID97_RS19970 at 4123.762 kb on + strand, within ABID97_RS19970 at 4123.849 kb on + strand, within ABID97_RS19970 at 4123.850 kb on - strand, within ABID97_RS19970 at 4123.850 kb on - strand, within ABID97_RS19970 at 4123.931 kb on - strand, within ABID97_RS19970 at 4123.998 kb on - strand, within ABID97_RS19970 at 4124.051 kb on + strand, within ABID97_RS19970 at 4124.051 kb on + strand, within ABID97_RS19970 at 4124.051 kb on + strand, within ABID97_RS19970 at 4124.052 kb on - strand, within ABID97_RS19970 at 4124.052 kb on - strand, within ABID97_RS19970 at 4124.056 kb on - strand, within ABID97_RS19970 at 4124.074 kb on + strand at 4124.090 kb on - strand, within ABID97_RS19970 at 4124.113 kb on + strand, within ABID97_RS19970 at 4124.215 kb on + strand at 4124.339 kb on - strand, within ABID97_RS19975 at 4124.570 kb on + strand, within ABID97_RS19975 at 4124.570 kb on + strand, within ABID97_RS19975 at 4124.690 kb on + strand, within ABID97_RS19975 at 4124.699 kb on + strand, within ABID97_RS19975 at 4124.700 kb on - strand, within ABID97_RS19975 at 4124.807 kb on + strand, within ABID97_RS19975 at 4124.876 kb on + strand, within ABID97_RS19975 at 4125.153 kb on + strand at 4125.189 kb on + strand at 4125.229 kb on - strand at 4125.377 kb on + strand at 4125.378 kb on - strand at 4125.378 kb on - strand at 4125.420 kb on - strand, within ABID97_RS19980 at 4125.651 kb on - strand, within ABID97_RS19980 at 4125.779 kb on + strand, within ABID97_RS19980 at 4125.779 kb on + strand, within ABID97_RS19980 at 4125.780 kb on - strand, within ABID97_RS19980 at 4126.082 kb on + strand, within ABID97_RS19980 at 4126.083 kb on - strand, within ABID97_RS19980
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,123,356 - ABID97_RS19965 0.87 +0.4 4,123,424 - +0.4 4,123,619 - +0.1 4,123,619 - +1.3 4,123,619 - +1.5 4,123,694 - ABID97_RS19970 0.18 +0.7 4,123,711 + ABID97_RS19970 0.20 +0.4 4,123,762 + ABID97_RS19970 0.28 +0.0 4,123,849 + ABID97_RS19970 0.42 +0.3 4,123,850 - ABID97_RS19970 0.42 -0.2 4,123,850 - ABID97_RS19970 0.42 +0.3 4,123,931 - ABID97_RS19970 0.54 -1.0 4,123,998 - ABID97_RS19970 0.65 +0.3 4,124,051 + ABID97_RS19970 0.73 -0.2 4,124,051 + ABID97_RS19970 0.73 +0.9 4,124,051 + ABID97_RS19970 0.73 -0.3 4,124,052 - ABID97_RS19970 0.73 -0.7 4,124,052 - ABID97_RS19970 0.73 +0.0 4,124,056 - ABID97_RS19970 0.74 +0.4 4,124,074 + +1.3 4,124,090 - ABID97_RS19970 0.79 +0.9 4,124,113 + ABID97_RS19970 0.82 +0.1 4,124,215 + +0.0 4,124,339 - ABID97_RS19975 0.11 -0.5 4,124,570 + ABID97_RS19975 0.38 -0.0 4,124,570 + ABID97_RS19975 0.38 -1.1 4,124,690 + ABID97_RS19975 0.51 -1.1 4,124,699 + ABID97_RS19975 0.53 -0.6 4,124,700 - ABID97_RS19975 0.53 -1.6 4,124,807 + ABID97_RS19975 0.65 -0.0 4,124,876 + ABID97_RS19975 0.73 +0.3 4,125,153 + +0.1 4,125,189 + -0.6 4,125,229 - -1.8 4,125,377 + +0.9 4,125,378 - -0.3 4,125,378 - +1.1 4,125,420 - ABID97_RS19980 0.12 -1.6 4,125,651 - ABID97_RS19980 0.37 -0.8 4,125,779 + ABID97_RS19980 0.50 -1.3 4,125,779 + ABID97_RS19980 0.50 +0.6 4,125,780 - ABID97_RS19980 0.50 +0.2 4,126,082 + ABID97_RS19980 0.82 -0.3 4,126,083 - ABID97_RS19980 0.82 +0.7
Or see this region's nucleotide sequence