Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18500 and ABID97_RS18505 are separated by 36 nucleotides ABID97_RS18505 and ABID97_RS18510 are separated by 6 nucleotides
ABID97_RS18500: ABID97_RS18500 - CaiB/BaiF CoA-transferase family protein, at 3,812,833 to 3,814,005
_RS18500
ABID97_RS18505: ABID97_RS18505 - transglutaminase family protein, at 3,814,042 to 3,814,719
_RS18505
ABID97_RS18510: ABID97_RS18510 - acyl-CoA dehydrogenase family protein, at 3,814,726 to 3,815,889
_RS18510
Position (kb) 3814
3815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3813.281 kb on + strand, within ABID97_RS18500 at 3813.302 kb on + strand, within ABID97_RS18500 at 3813.302 kb on + strand, within ABID97_RS18500 at 3813.302 kb on + strand, within ABID97_RS18500 at 3813.594 kb on - strand, within ABID97_RS18500 at 3813.594 kb on - strand, within ABID97_RS18500 at 3813.689 kb on - strand, within ABID97_RS18500 at 3814.082 kb on + strand at 3814.152 kb on - strand at 3814.152 kb on - strand, within ABID97_RS18505 at 3814.863 kb on + strand, within ABID97_RS18510 at 3815.069 kb on + strand, within ABID97_RS18510 at 3815.069 kb on + strand, within ABID97_RS18510 at 3815.162 kb on + strand, within ABID97_RS18510 at 3815.162 kb on + strand, within ABID97_RS18510 at 3815.537 kb on + strand, within ABID97_RS18510 at 3815.584 kb on - strand, within ABID97_RS18510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,813,281 + ABID97_RS18500 0.38 -0.4 3,813,302 + ABID97_RS18500 0.40 -2.9 3,813,302 + ABID97_RS18500 0.40 -0.2 3,813,302 + ABID97_RS18500 0.40 +0.0 3,813,594 - ABID97_RS18500 0.65 +0.4 3,813,594 - ABID97_RS18500 0.65 -0.1 3,813,689 - ABID97_RS18500 0.73 +1.2 3,814,082 + +0.8 3,814,152 - +1.2 3,814,152 - ABID97_RS18505 0.16 -1.2 3,814,863 + ABID97_RS18510 0.12 +1.5 3,815,069 + ABID97_RS18510 0.29 +0.9 3,815,069 + ABID97_RS18510 0.29 -0.4 3,815,162 + ABID97_RS18510 0.37 +0.7 3,815,162 + ABID97_RS18510 0.37 -0.4 3,815,537 + ABID97_RS18510 0.70 +3.2 3,815,584 - ABID97_RS18510 0.74 +0.2
Or see this region's nucleotide sequence