Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18055 and ABID97_RS18060 are separated by 124 nucleotides ABID97_RS18060 and ABID97_RS18065 are separated by 23 nucleotides ABID97_RS18065 and ABID97_RS18070 are separated by 97 nucleotides
ABID97_RS18055: ABID97_RS18055 - Crp/Fnr family transcriptional regulator, at 3,729,948 to 3,730,667
_RS18055
ABID97_RS18060: ABID97_RS18060 - HD domain-containing protein, at 3,730,792 to 3,731,382
_RS18060
ABID97_RS18065: ABID97_RS18065 - class II aldolase/adducin family protein, at 3,731,406 to 3,732,173
_RS18065
ABID97_RS18070: ABID97_RS18070 - bile acid:sodium symporter family protein, at 3,732,271 to 3,733,149
_RS18070
Position (kb) 3731
3732
3733 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3730.481 kb on - strand, within ABID97_RS18055 at 3730.699 kb on + strand at 3730.752 kb on + strand at 3730.954 kb on + strand, within ABID97_RS18060 at 3731.011 kb on + strand, within ABID97_RS18060 at 3731.011 kb on + strand, within ABID97_RS18060 at 3731.347 kb on + strand at 3731.347 kb on + strand at 3731.348 kb on - strand at 3731.348 kb on - strand at 3731.348 kb on - strand at 3731.348 kb on - strand at 3731.583 kb on + strand, within ABID97_RS18065 at 3731.584 kb on - strand, within ABID97_RS18065 at 3731.910 kb on + strand, within ABID97_RS18065 at 3731.910 kb on + strand, within ABID97_RS18065 at 3731.911 kb on - strand, within ABID97_RS18065 at 3731.979 kb on + strand, within ABID97_RS18065 at 3731.979 kb on + strand, within ABID97_RS18065 at 3731.980 kb on - strand, within ABID97_RS18065 at 3731.980 kb on - strand, within ABID97_RS18065 at 3732.162 kb on + strand at 3732.163 kb on - strand at 3732.171 kb on + strand at 3732.171 kb on + strand at 3732.172 kb on - strand at 3732.440 kb on - strand, within ABID97_RS18070 at 3732.922 kb on + strand, within ABID97_RS18070 at 3732.922 kb on + strand, within ABID97_RS18070 at 3732.973 kb on + strand, within ABID97_RS18070 at 3732.974 kb on - strand, within ABID97_RS18070 at 3732.974 kb on - strand, within ABID97_RS18070 at 3733.064 kb on - strand at 3733.078 kb on + strand at 3733.078 kb on + strand at 3733.078 kb on + strand at 3733.078 kb on + strand at 3733.078 kb on + strand at 3733.079 kb on - strand at 3733.079 kb on - strand at 3733.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,730,481 - ABID97_RS18055 0.74 -1.2 3,730,699 + -1.2 3,730,752 + -0.3 3,730,954 + ABID97_RS18060 0.27 +0.1 3,731,011 + ABID97_RS18060 0.37 +0.6 3,731,011 + ABID97_RS18060 0.37 -1.2 3,731,347 + +4.0 3,731,347 + +2.0 3,731,348 - -0.2 3,731,348 - +0.0 3,731,348 - +0.1 3,731,348 - -0.9 3,731,583 + ABID97_RS18065 0.23 -0.9 3,731,584 - ABID97_RS18065 0.23 +0.5 3,731,910 + ABID97_RS18065 0.66 -0.4 3,731,910 + ABID97_RS18065 0.66 +0.1 3,731,911 - ABID97_RS18065 0.66 -0.4 3,731,979 + ABID97_RS18065 0.75 +0.1 3,731,979 + ABID97_RS18065 0.75 +0.4 3,731,980 - ABID97_RS18065 0.75 -1.1 3,731,980 - ABID97_RS18065 0.75 +0.2 3,732,162 + +2.5 3,732,163 - +0.3 3,732,171 + -0.1 3,732,171 + +0.0 3,732,172 - -0.3 3,732,440 - ABID97_RS18070 0.19 -0.8 3,732,922 + ABID97_RS18070 0.74 -0.6 3,732,922 + ABID97_RS18070 0.74 -0.4 3,732,973 + ABID97_RS18070 0.80 +0.0 3,732,974 - ABID97_RS18070 0.80 +0.4 3,732,974 - ABID97_RS18070 0.80 +0.7 3,733,064 - +0.9 3,733,078 + -0.2 3,733,078 + -2.1 3,733,078 + +0.2 3,733,078 + +0.7 3,733,078 + -0.7 3,733,079 - -0.4 3,733,079 - -0.1 3,733,079 - -0.7
Or see this region's nucleotide sequence