Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17105

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17095 and ABID97_RS17100 are separated by 8 nucleotidesABID97_RS17100 and ABID97_RS17105 overlap by 29 nucleotidesABID97_RS17105 and ABID97_RS17110 are separated by 7 nucleotidesABID97_RS17110 and ABID97_RS17115 are separated by 23 nucleotides ABID97_RS17095: ABID97_RS17095 - RNA methyltransferase, at 3,533,439 to 3,534,233 _RS17095 ABID97_RS17100: ABID97_RS17100 - ribonuclease HII, at 3,534,242 to 3,534,961 _RS17100 ABID97_RS17105: ABID97_RS17105 - lipid-A-disaccharide synthase, at 3,534,933 to 3,536,084 _RS17105 ABID97_RS17110: ABID97_RS17110 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 3,536,092 to 3,536,880 _RS17110 ABID97_RS17115: ABID97_RS17115 - 3-hydroxyacyl-ACP dehydratase FabZ, at 3,536,904 to 3,537,353 _RS17115 Position (kb) 3534 3535 3536 3537Strain fitness (log2 ratio) -1 0 1at 3534.438 kb on + strand, within ABID97_RS17100at 3534.439 kb on - strand, within ABID97_RS17100at 3534.439 kb on - strand, within ABID97_RS17100at 3534.463 kb on - strand, within ABID97_RS17100

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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3,534,438 + ABID97_RS17100 0.27 -0.4
3,534,439 - ABID97_RS17100 0.27 +0.8
3,534,439 - ABID97_RS17100 0.27 +0.7
3,534,463 - ABID97_RS17100 0.31 +0.3

Or see this region's nucleotide sequence