Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16620 and ABID97_RS16625 are separated by 32 nucleotides ABID97_RS16625 and ABID97_RS16630 are separated by 46 nucleotides
ABID97_RS16620: ABID97_RS16620 - amino-acid N-acetyltransferase, at 3,439,364 to 3,440,710
_RS16620
ABID97_RS16625: ABID97_RS16625 - LysE family translocator, at 3,440,743 to 3,441,390
_RS16625
ABID97_RS16630: ABID97_RS16630 - succinyldiaminopimelate transaminase, at 3,441,437 to 3,442,657
_RS16630
Position (kb) 3440
3441
3442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3440.724 kb on + strand at 3440.724 kb on + strand at 3440.986 kb on + strand, within ABID97_RS16625 at 3440.987 kb on - strand, within ABID97_RS16625 at 3440.987 kb on - strand, within ABID97_RS16625 at 3441.143 kb on - strand, within ABID97_RS16625 at 3441.143 kb on - strand, within ABID97_RS16625 at 3441.205 kb on + strand, within ABID97_RS16625 at 3441.205 kb on + strand, within ABID97_RS16625 at 3441.206 kb on - strand, within ABID97_RS16625 at 3441.259 kb on + strand, within ABID97_RS16625 at 3441.260 kb on - strand, within ABID97_RS16625 at 3441.260 kb on - strand, within ABID97_RS16625 at 3441.260 kb on - strand, within ABID97_RS16625 at 3441.370 kb on + strand at 3441.815 kb on + strand, within ABID97_RS16630 at 3441.816 kb on - strand, within ABID97_RS16630 at 3441.825 kb on - strand, within ABID97_RS16630 at 3441.825 kb on - strand, within ABID97_RS16630 at 3441.825 kb on - strand, within ABID97_RS16630 at 3441.860 kb on + strand, within ABID97_RS16630 at 3441.861 kb on - strand, within ABID97_RS16630 at 3441.863 kb on + strand, within ABID97_RS16630 at 3441.863 kb on + strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.864 kb on - strand, within ABID97_RS16630 at 3441.867 kb on + strand, within ABID97_RS16630 at 3441.868 kb on - strand, within ABID97_RS16630 at 3442.059 kb on - strand, within ABID97_RS16630 at 3442.070 kb on + strand, within ABID97_RS16630 at 3442.250 kb on + strand, within ABID97_RS16630 at 3442.250 kb on + strand, within ABID97_RS16630 at 3442.250 kb on + strand, within ABID97_RS16630 at 3442.250 kb on + strand, within ABID97_RS16630 at 3442.251 kb on - strand, within ABID97_RS16630 at 3442.251 kb on - strand, within ABID97_RS16630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,440,724 + +1.4 3,440,724 + -1.2 3,440,986 + ABID97_RS16625 0.38 +0.4 3,440,987 - ABID97_RS16625 0.38 -0.2 3,440,987 - ABID97_RS16625 0.38 +0.7 3,441,143 - ABID97_RS16625 0.62 +0.8 3,441,143 - ABID97_RS16625 0.62 +0.4 3,441,205 + ABID97_RS16625 0.71 +1.5 3,441,205 + ABID97_RS16625 0.71 -0.2 3,441,206 - ABID97_RS16625 0.71 +3.4 3,441,259 + ABID97_RS16625 0.80 +1.4 3,441,260 - ABID97_RS16625 0.80 +0.4 3,441,260 - ABID97_RS16625 0.80 -0.2 3,441,260 - ABID97_RS16625 0.80 +1.9 3,441,370 + +1.0 3,441,815 + ABID97_RS16630 0.31 -0.3 3,441,816 - ABID97_RS16630 0.31 -2.9 3,441,825 - ABID97_RS16630 0.32 +0.1 3,441,825 - ABID97_RS16630 0.32 +0.7 3,441,825 - ABID97_RS16630 0.32 -0.1 3,441,860 + ABID97_RS16630 0.35 +0.9 3,441,861 - ABID97_RS16630 0.35 +1.2 3,441,863 + ABID97_RS16630 0.35 -0.1 3,441,863 + ABID97_RS16630 0.35 -0.4 3,441,864 - ABID97_RS16630 0.35 -1.0 3,441,864 - ABID97_RS16630 0.35 -0.2 3,441,864 - ABID97_RS16630 0.35 -0.7 3,441,864 - ABID97_RS16630 0.35 -0.4 3,441,864 - ABID97_RS16630 0.35 +0.4 3,441,864 - ABID97_RS16630 0.35 +0.4 3,441,867 + ABID97_RS16630 0.35 -1.7 3,441,868 - ABID97_RS16630 0.35 +3.7 3,442,059 - ABID97_RS16630 0.51 -0.5 3,442,070 + ABID97_RS16630 0.52 -0.6 3,442,250 + ABID97_RS16630 0.67 -0.1 3,442,250 + ABID97_RS16630 0.67 -0.0 3,442,250 + ABID97_RS16630 0.67 -0.4 3,442,250 + ABID97_RS16630 0.67 -0.3 3,442,251 - ABID97_RS16630 0.67 +0.3 3,442,251 - ABID97_RS16630 0.67 -1.0
Or see this region's nucleotide sequence