Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16260 and ABID97_RS16265 overlap by 17 nucleotides ABID97_RS16265 and ABID97_RS16270 are separated by 482 nucleotides
ABID97_RS16260: ABID97_RS16260 - 8-amino-7-oxononanoate synthase, at 3,365,393 to 3,366,613
_RS16260
ABID97_RS16265: ABID97_RS16265 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 3,366,597 to 3,367,991
_RS16265
ABID97_RS16270: ABID97_RS16270 - UdgX family uracil-DNA binding protein, at 3,368,474 to 3,369,172
_RS16270
Position (kb) 3366
3367
3368 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3365.791 kb on - strand, within ABID97_RS16260 at 3365.791 kb on - strand, within ABID97_RS16260 at 3366.255 kb on + strand, within ABID97_RS16260 at 3366.256 kb on - strand, within ABID97_RS16260 at 3366.447 kb on + strand, within ABID97_RS16260 at 3366.724 kb on + strand at 3366.994 kb on + strand, within ABID97_RS16265 at 3366.995 kb on - strand, within ABID97_RS16265 at 3367.048 kb on + strand, within ABID97_RS16265 at 3367.451 kb on - strand, within ABID97_RS16265 at 3367.621 kb on + strand, within ABID97_RS16265 at 3367.622 kb on - strand, within ABID97_RS16265 at 3367.622 kb on - strand, within ABID97_RS16265 at 3367.810 kb on + strand, within ABID97_RS16265 at 3367.810 kb on + strand, within ABID97_RS16265 at 3367.811 kb on - strand, within ABID97_RS16265 at 3367.811 kb on - strand, within ABID97_RS16265 at 3368.726 kb on + strand, within ABID97_RS16270 at 3368.726 kb on + strand, within ABID97_RS16270 at 3368.727 kb on - strand, within ABID97_RS16270 at 3368.727 kb on - strand, within ABID97_RS16270 at 3368.757 kb on - strand, within ABID97_RS16270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,365,791 - ABID97_RS16260 0.33 -0.2 3,365,791 - ABID97_RS16260 0.33 -0.5 3,366,255 + ABID97_RS16260 0.71 +0.0 3,366,256 - ABID97_RS16260 0.71 +1.2 3,366,447 + ABID97_RS16260 0.86 -2.5 3,366,724 + -0.0 3,366,994 + ABID97_RS16265 0.28 +1.4 3,366,995 - ABID97_RS16265 0.29 -1.0 3,367,048 + ABID97_RS16265 0.32 -3.8 3,367,451 - ABID97_RS16265 0.61 +3.1 3,367,621 + ABID97_RS16265 0.73 +0.8 3,367,622 - ABID97_RS16265 0.73 -0.6 3,367,622 - ABID97_RS16265 0.73 +0.6 3,367,810 + ABID97_RS16265 0.87 +0.7 3,367,810 + ABID97_RS16265 0.87 -2.4 3,367,811 - ABID97_RS16265 0.87 +0.1 3,367,811 - ABID97_RS16265 0.87 -0.5 3,368,726 + ABID97_RS16270 0.36 -0.9 3,368,726 + ABID97_RS16270 0.36 +1.5 3,368,727 - ABID97_RS16270 0.36 +1.1 3,368,727 - ABID97_RS16270 0.36 +0.2 3,368,757 - ABID97_RS16270 0.40 +0.4
Or see this region's nucleotide sequence