Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15725 and ABID97_RS15730 overlap by 1 nucleotides ABID97_RS15730 and ABID97_RS15735 are separated by 5 nucleotides ABID97_RS15735 and ABID97_RS15740 are separated by 259 nucleotides
ABID97_RS15725: ABID97_RS15725 - branched-chain amino acid ABC transporter permease, at 3,256,417 to 3,257,733
_RS15725
ABID97_RS15730: ABID97_RS15730 - ABC transporter ATP-binding protein, at 3,257,733 to 3,258,509
_RS15730
ABID97_RS15735: ABID97_RS15735 - ABC transporter ATP-binding protein, at 3,258,515 to 3,259,210
_RS15735
ABID97_RS15740: ABID97_RS15740 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 3,259,470 to 3,261,575
_RS15740
Position (kb) 3257
3258
3259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3257.009 kb on - strand, within ABID97_RS15725 at 3257.110 kb on - strand, within ABID97_RS15725 at 3257.338 kb on + strand, within ABID97_RS15725 at 3257.455 kb on + strand, within ABID97_RS15725 at 3257.455 kb on + strand, within ABID97_RS15725 at 3257.455 kb on + strand, within ABID97_RS15725 at 3258.073 kb on - strand, within ABID97_RS15730 at 3258.399 kb on + strand, within ABID97_RS15730 at 3258.465 kb on + strand at 3258.466 kb on - strand at 3258.466 kb on - strand at 3258.511 kb on + strand at 3258.749 kb on + strand, within ABID97_RS15735 at 3258.857 kb on + strand, within ABID97_RS15735 at 3258.858 kb on - strand, within ABID97_RS15735 at 3258.858 kb on - strand, within ABID97_RS15735 at 3258.858 kb on - strand, within ABID97_RS15735 at 3259.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,257,009 - ABID97_RS15725 0.45 +2.2 3,257,110 - ABID97_RS15725 0.53 -0.2 3,257,338 + ABID97_RS15725 0.70 -0.5 3,257,455 + ABID97_RS15725 0.79 -0.5 3,257,455 + ABID97_RS15725 0.79 +0.4 3,257,455 + ABID97_RS15725 0.79 -0.1 3,258,073 - ABID97_RS15730 0.44 -1.4 3,258,399 + ABID97_RS15730 0.86 +0.2 3,258,465 + -0.9 3,258,466 - -0.3 3,258,466 - +0.5 3,258,511 + +0.6 3,258,749 + ABID97_RS15735 0.34 +0.1 3,258,857 + ABID97_RS15735 0.49 -0.1 3,258,858 - ABID97_RS15735 0.49 -2.9 3,258,858 - ABID97_RS15735 0.49 -2.1 3,258,858 - ABID97_RS15735 0.49 -0.2 3,259,482 + +1.0
Or see this region's nucleotide sequence