Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15435

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15430 and ABID97_RS15435 are separated by 45 nucleotidesABID97_RS15435 and ABID97_RS15440 are separated by 2 nucleotidesABID97_RS15440 and ABID97_RS15445 are separated by 132 nucleotides ABID97_RS15430: ABID97_RS15430 - FAD-binding oxidoreductase, at 3,193,119 to 3,194,291 _RS15430 ABID97_RS15435: ABID97_RS15435 - class I fructose-bisphosphate aldolase, at 3,194,337 to 3,195,368 _RS15435 ABID97_RS15440: ABID97_RS15440 - peptide-methionine (S)-S-oxide reductase MsrA, at 3,195,371 to 3,196,075 _RS15440 ABID97_RS15445: ABID97_RS15445 - alpha/beta hydrolase, at 3,196,208 to 3,197,716 _RS15445 Position (kb) 3194 3195 3196Strain fitness (log2 ratio) -2 -1 0 1 2at 3193.401 kb on + strand, within ABID97_RS15430at 3193.401 kb on + strand, within ABID97_RS15430at 3193.407 kb on + strand, within ABID97_RS15430at 3193.408 kb on - strand, within ABID97_RS15430at 3194.061 kb on + strand, within ABID97_RS15430at 3194.062 kb on - strand, within ABID97_RS15430at 3194.124 kb on + strand, within ABID97_RS15430at 3194.124 kb on + strand, within ABID97_RS15430at 3194.125 kb on - strand, within ABID97_RS15430at 3194.211 kb on + strandat 3194.212 kb on - strandat 3194.289 kb on + strandat 3194.312 kb on + strandat 3194.312 kb on + strandat 3195.334 kb on - strandat 3195.334 kb on - strandat 3195.414 kb on + strandat 3195.474 kb on + strand, within ABID97_RS15440at 3195.475 kb on - strand, within ABID97_RS15440at 3195.475 kb on - strand, within ABID97_RS15440at 3195.513 kb on + strand, within ABID97_RS15440at 3195.528 kb on + strand, within ABID97_RS15440at 3195.603 kb on + strand, within ABID97_RS15440at 3195.657 kb on + strand, within ABID97_RS15440at 3195.722 kb on + strand, within ABID97_RS15440at 3195.722 kb on + strand, within ABID97_RS15440at 3195.741 kb on + strand, within ABID97_RS15440at 3195.741 kb on + strand, within ABID97_RS15440at 3195.936 kb on + strand, within ABID97_RS15440at 3195.936 kb on + strand, within ABID97_RS15440at 3195.959 kb on + strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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3,193,401 + ABID97_RS15430 0.24 -0.5
3,193,401 + ABID97_RS15430 0.24 -0.7
3,193,407 + ABID97_RS15430 0.25 -0.1
3,193,408 - ABID97_RS15430 0.25 -2.4
3,194,061 + ABID97_RS15430 0.80 +0.2
3,194,062 - ABID97_RS15430 0.80 -0.6
3,194,124 + ABID97_RS15430 0.86 +0.8
3,194,124 + ABID97_RS15430 0.86 -0.1
3,194,125 - ABID97_RS15430 0.86 +0.2
3,194,211 + -0.7
3,194,212 - -0.3
3,194,289 + +0.5
3,194,312 + -0.7
3,194,312 + -0.1
3,195,334 - -1.5
3,195,334 - +1.9
3,195,414 + +1.1
3,195,474 + ABID97_RS15440 0.15 -0.4
3,195,475 - ABID97_RS15440 0.15 -0.2
3,195,475 - ABID97_RS15440 0.15 -0.3
3,195,513 + ABID97_RS15440 0.20 -0.2
3,195,528 + ABID97_RS15440 0.22 +0.2
3,195,603 + ABID97_RS15440 0.33 +0.7
3,195,657 + ABID97_RS15440 0.41 +1.3
3,195,722 + ABID97_RS15440 0.50 +1.5
3,195,722 + ABID97_RS15440 0.50 +2.2
3,195,741 + ABID97_RS15440 0.52 +2.2
3,195,741 + ABID97_RS15440 0.52 +0.5
3,195,936 + ABID97_RS15440 0.80 +1.8
3,195,936 + ABID97_RS15440 0.80 +0.0
3,195,959 + ABID97_RS15440 0.83 +0.6
3,195,960 - ABID97_RS15440 0.84 +0.1
3,195,960 - ABID97_RS15440 0.84 +1.0
3,195,960 - ABID97_RS15440 0.84 -0.3
3,195,960 - ABID97_RS15440 0.84 +1.1
3,195,960 - ABID97_RS15440 0.84 -1.5
3,195,960 - ABID97_RS15440 0.84 -0.1
3,195,960 - ABID97_RS15440 0.84 -0.6

Or see this region's nucleotide sequence