Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08885 and ABID97_RS08890 overlap by 4 nucleotides ABID97_RS08890 and ABID97_RS08895 are separated by 40 nucleotides ABID97_RS08895 and ABID97_RS08900 are separated by 43 nucleotides
ABID97_RS08885: ABID97_RS08885 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,861,624 to 1,862,949
_RS08885
ABID97_RS08890: ABID97_RS08890 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 1,862,946 to 1,863,413
_RS08890
ABID97_RS08895: ABID97_RS08895 - ABC transporter substrate-binding protein, at 1,863,454 to 1,864,617
_RS08895
ABID97_RS08900: ABID97_RS08900 - branched-chain amino acid ABC transporter permease, at 1,864,661 to 1,865,716
_RS08900
Position (kb) 1863
1864
1865 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1862.708 kb on - strand, within ABID97_RS08885 at 1863.046 kb on - strand, within ABID97_RS08890 at 1863.449 kb on - strand at 1863.947 kb on - strand, within ABID97_RS08895 at 1863.982 kb on + strand, within ABID97_RS08895 at 1864.187 kb on - strand, within ABID97_RS08895 at 1864.187 kb on - strand, within ABID97_RS08895 at 1864.525 kb on + strand at 1864.660 kb on + strand at 1864.661 kb on - strand at 1865.412 kb on - strand, within ABID97_RS08900 at 1865.475 kb on - strand, within ABID97_RS08900 at 1865.475 kb on - strand, within ABID97_RS08900
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,862,708 - ABID97_RS08885 0.82 +0.5 1,863,046 - ABID97_RS08890 0.21 -0.2 1,863,449 - -3.0 1,863,947 - ABID97_RS08895 0.42 +1.2 1,863,982 + ABID97_RS08895 0.45 +1.1 1,864,187 - ABID97_RS08895 0.63 +0.9 1,864,187 - ABID97_RS08895 0.63 +1.7 1,864,525 + -0.5 1,864,660 + -1.9 1,864,661 - -0.3 1,865,412 - ABID97_RS08900 0.71 +0.0 1,865,475 - ABID97_RS08900 0.77 +0.4 1,865,475 - ABID97_RS08900 0.77 -2.0
Or see this region's nucleotide sequence