Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07190 and ABID97_RS07195 are separated by 144 nucleotides ABID97_RS07195 and ABID97_RS07200 are separated by 86 nucleotides ABID97_RS07200 and ABID97_RS07205 are separated by 71 nucleotides
ABID97_RS07190: ABID97_RS07190 - peptide chain release factor 1, at 1,522,654 to 1,523,742
_RS07190
ABID97_RS07195: ABID97_RS07195 - glutamyl-tRNA reductase, at 1,523,887 to 1,525,158
_RS07195
ABID97_RS07200: ABID97_RS07200 - hypothetical protein, at 1,525,245 to 1,525,520
_RS07200
ABID97_RS07205: ABID97_RS07205 - DUF3772 domain-containing protein, at 1,525,592 to 1,527,985
_RS07205
Position (kb)
1523
1524
1525
1526 Strain fitness (log2 ratio)
-1
0
1 at 1525.159 kb on - strand at 1525.171 kb on + strand at 1525.171 kb on + strand at 1525.171 kb on + strand at 1525.205 kb on + strand at 1525.647 kb on + strand at 1525.743 kb on + strand at 1525.743 kb on + strand at 1525.743 kb on + strand at 1525.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,525,159 - +0.4 1,525,171 + -0.2 1,525,171 + -0.4 1,525,171 + -0.7 1,525,205 + +0.7 1,525,647 + -0.8 1,525,743 + +0.9 1,525,743 + +0.3 1,525,743 + -0.4 1,525,744 - -0.2
Or see this region's nucleotide sequence