Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07195

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07190 and ABID97_RS07195 are separated by 144 nucleotidesABID97_RS07195 and ABID97_RS07200 are separated by 86 nucleotidesABID97_RS07200 and ABID97_RS07205 are separated by 71 nucleotides ABID97_RS07190: ABID97_RS07190 - peptide chain release factor 1, at 1,522,654 to 1,523,742 _RS07190 ABID97_RS07195: ABID97_RS07195 - glutamyl-tRNA reductase, at 1,523,887 to 1,525,158 _RS07195 ABID97_RS07200: ABID97_RS07200 - hypothetical protein, at 1,525,245 to 1,525,520 _RS07200 ABID97_RS07205: ABID97_RS07205 - DUF3772 domain-containing protein, at 1,525,592 to 1,527,985 _RS07205 Position (kb) 1523 1524 1525 1526Strain fitness (log2 ratio) -1 0 1at 1525.159 kb on - strandat 1525.171 kb on + strandat 1525.171 kb on + strandat 1525.171 kb on + strandat 1525.205 kb on + strandat 1525.647 kb on + strandat 1525.743 kb on + strandat 1525.743 kb on + strandat 1525.743 kb on + strandat 1525.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,525,159 - +0.4
1,525,171 + -0.2
1,525,171 + -0.4
1,525,171 + -0.7
1,525,205 + +0.7
1,525,647 + -0.8
1,525,743 + +0.9
1,525,743 + +0.3
1,525,743 + -0.4
1,525,744 - -0.2

Or see this region's nucleotide sequence