Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04270 and ABID97_RS04275 are separated by 50 nucleotides ABID97_RS04275 and ABID97_RS04280 overlap by 1 nucleotides
ABID97_RS04270: ABID97_RS04270 - tripartite tricarboxylate transporter substrate binding protein, at 877,156 to 878,139
_RS04270
ABID97_RS04275: ABID97_RS04275 - tripartite tricarboxylate transporter substrate-binding protein, at 878,190 to 879,167
_RS04275
ABID97_RS04280: ABID97_RS04280 - FAD-dependent oxidoreductase, at 879,167 to 880,534
_RS04280
Position (kb) 878
879
880 Strain fitness (log2 ratio) -1
0
1 at 877.474 kb on + strand, within ABID97_RS04270 at 877.474 kb on + strand, within ABID97_RS04270 at 877.475 kb on - strand, within ABID97_RS04270 at 877.475 kb on - strand, within ABID97_RS04270 at 877.628 kb on - strand, within ABID97_RS04270 at 877.801 kb on + strand, within ABID97_RS04270 at 877.801 kb on + strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.802 kb on - strand, within ABID97_RS04270 at 877.823 kb on - strand, within ABID97_RS04270 at 878.098 kb on + strand at 878.099 kb on - strand at 878.099 kb on - strand at 878.462 kb on + strand, within ABID97_RS04275 at 878.462 kb on + strand, within ABID97_RS04275 at 878.462 kb on + strand, within ABID97_RS04275 at 878.463 kb on - strand, within ABID97_RS04275 at 878.511 kb on + strand, within ABID97_RS04275 at 878.526 kb on + strand, within ABID97_RS04275 at 878.550 kb on + strand, within ABID97_RS04275 at 878.551 kb on - strand, within ABID97_RS04275 at 878.659 kb on - strand, within ABID97_RS04275 at 878.659 kb on - strand, within ABID97_RS04275 at 879.329 kb on + strand, within ABID97_RS04280 at 879.387 kb on - strand, within ABID97_RS04280 at 879.534 kb on - strand, within ABID97_RS04280 at 879.534 kb on - strand, within ABID97_RS04280 at 879.968 kb on - strand, within ABID97_RS04280 at 880.052 kb on + strand, within ABID97_RS04280 at 880.157 kb on + strand, within ABID97_RS04280 at 880.158 kb on - strand, within ABID97_RS04280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 877,474 + ABID97_RS04270 0.32 -0.7 877,474 + ABID97_RS04270 0.32 -1.1 877,475 - ABID97_RS04270 0.32 +0.1 877,475 - ABID97_RS04270 0.32 +1.7 877,628 - ABID97_RS04270 0.48 +0.6 877,801 + ABID97_RS04270 0.66 -0.5 877,801 + ABID97_RS04270 0.66 +0.0 877,802 - ABID97_RS04270 0.66 +0.1 877,802 - ABID97_RS04270 0.66 +0.6 877,802 - ABID97_RS04270 0.66 -0.9 877,823 - ABID97_RS04270 0.68 +1.4 878,098 + -0.5 878,099 - -1.3 878,099 - -0.8 878,462 + ABID97_RS04275 0.28 -0.8 878,462 + ABID97_RS04275 0.28 -0.2 878,462 + ABID97_RS04275 0.28 -0.4 878,463 - ABID97_RS04275 0.28 +0.4 878,511 + ABID97_RS04275 0.33 -1.2 878,526 + ABID97_RS04275 0.34 +0.1 878,550 + ABID97_RS04275 0.37 +1.4 878,551 - ABID97_RS04275 0.37 -0.5 878,659 - ABID97_RS04275 0.48 +0.4 878,659 - ABID97_RS04275 0.48 -0.2 879,329 + ABID97_RS04280 0.12 -0.5 879,387 - ABID97_RS04280 0.16 +0.6 879,534 - ABID97_RS04280 0.27 +0.4 879,534 - ABID97_RS04280 0.27 -1.0 879,968 - ABID97_RS04280 0.59 +0.6 880,052 + ABID97_RS04280 0.65 +0.5 880,157 + ABID97_RS04280 0.72 -0.8 880,158 - ABID97_RS04280 0.72 -0.4
Or see this region's nucleotide sequence