Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04140 and ABID97_RS04145 are separated by 14 nucleotides ABID97_RS04145 and ABID97_RS04150 are separated by 43 nucleotides ABID97_RS04150 and ABID97_RS04155 overlap by 4 nucleotides
ABID97_RS04140: ABID97_RS04140 - acyl-CoA dehydrogenase family protein, at 848,727 to 849,887
_RS04140
ABID97_RS04145: ABID97_RS04145 - SDR family oxidoreductase, at 849,902 to 850,819
_RS04145
ABID97_RS04150: ABID97_RS04150 - acetyl-CoA carboxylase biotin carboxylase subunit, at 850,863 to 852,812
_RS04150
ABID97_RS04155: ABID97_RS04155 - acyl-CoA carboxylase subunit beta, at 852,809 to 854,419
_RS04155
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.880 kb on + strand at 849.880 kb on + strand at 849.880 kb on + strand at 849.881 kb on - strand at 849.881 kb on - strand at 850.227 kb on + strand, within ABID97_RS04145 at 850.228 kb on - strand, within ABID97_RS04145 at 850.500 kb on + strand, within ABID97_RS04145 at 850.500 kb on + strand, within ABID97_RS04145 at 850.501 kb on - strand, within ABID97_RS04145 at 851.671 kb on + strand, within ABID97_RS04150 at 851.671 kb on + strand, within ABID97_RS04150 at 852.008 kb on - strand, within ABID97_RS04150 at 852.410 kb on - strand, within ABID97_RS04150 at 853.159 kb on - strand, within ABID97_RS04155 at 853.159 kb on - strand, within ABID97_RS04155 at 853.159 kb on - strand, within ABID97_RS04155 at 853.173 kb on + strand, within ABID97_RS04155 at 853.173 kb on + strand, within ABID97_RS04155 at 853.174 kb on - strand, within ABID97_RS04155 at 853.174 kb on - strand, within ABID97_RS04155 at 853.287 kb on + strand, within ABID97_RS04155 at 853.456 kb on - strand, within ABID97_RS04155 at 853.572 kb on + strand, within ABID97_RS04155 at 853.573 kb on - strand, within ABID97_RS04155 at 853.677 kb on + strand, within ABID97_RS04155 at 853.677 kb on + strand, within ABID97_RS04155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 849,880 + +0.9 849,880 + +0.6 849,880 + -2.0 849,881 - +1.5 849,881 - -0.1 850,227 + ABID97_RS04145 0.35 -0.9 850,228 - ABID97_RS04145 0.36 -1.2 850,500 + ABID97_RS04145 0.65 +0.7 850,500 + ABID97_RS04145 0.65 -0.6 850,501 - ABID97_RS04145 0.65 -0.2 851,671 + ABID97_RS04150 0.41 -1.1 851,671 + ABID97_RS04150 0.41 +0.3 852,008 - ABID97_RS04150 0.59 +0.1 852,410 - ABID97_RS04150 0.79 -0.3 853,159 - ABID97_RS04155 0.22 -1.5 853,159 - ABID97_RS04155 0.22 -1.4 853,159 - ABID97_RS04155 0.22 -1.1 853,173 + ABID97_RS04155 0.23 -0.9 853,173 + ABID97_RS04155 0.23 +2.2 853,174 - ABID97_RS04155 0.23 +2.2 853,174 - ABID97_RS04155 0.23 -0.1 853,287 + ABID97_RS04155 0.30 -0.5 853,456 - ABID97_RS04155 0.40 -1.0 853,572 + ABID97_RS04155 0.47 +0.0 853,573 - ABID97_RS04155 0.47 +0.0 853,677 + ABID97_RS04155 0.54 -0.7 853,677 + ABID97_RS04155 0.54 +0.0
Or see this region's nucleotide sequence