Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03770 and ABID97_RS03775 are separated by 53 nucleotides ABID97_RS03775 and ABID97_RS03780 are separated by 135 nucleotides ABID97_RS03780 and ABID97_RS03785 are separated by 27 nucleotides
ABID97_RS03770: ABID97_RS03770 - DNA repair protein RadA, at 773,224 to 774,618
_RS03770
ABID97_RS03775: ABID97_RS03775 - hypothetical protein, at 774,672 to 775,127
_RS03775
ABID97_RS03780: ABID97_RS03780 - glycerate kinase, at 775,263 to 775,691
_RS03780
ABID97_RS03785: ABID97_RS03785 - recombination-associated protein RdgC, at 775,719 to 776,730
_RS03785
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 773.774 kb on - strand, within ABID97_RS03770 at 773.950 kb on + strand, within ABID97_RS03770 at 773.951 kb on - strand, within ABID97_RS03770 at 773.951 kb on - strand, within ABID97_RS03770 at 774.754 kb on + strand, within ABID97_RS03775 at 774.997 kb on + strand, within ABID97_RS03775 at 775.127 kb on + strand at 775.127 kb on + strand at 775.128 kb on - strand at 775.128 kb on - strand at 775.128 kb on - strand at 775.246 kb on + strand at 775.338 kb on + strand, within ABID97_RS03780 at 775.339 kb on - strand, within ABID97_RS03780 at 775.339 kb on - strand, within ABID97_RS03780 at 775.573 kb on - strand, within ABID97_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 773,774 - ABID97_RS03770 0.39 -0.5 773,950 + ABID97_RS03770 0.52 +0.2 773,951 - ABID97_RS03770 0.52 +2.1 773,951 - ABID97_RS03770 0.52 -1.1 774,754 + ABID97_RS03775 0.18 +0.1 774,997 + ABID97_RS03775 0.71 -0.4 775,127 + -0.1 775,127 + +0.5 775,128 - -0.6 775,128 - -0.6 775,128 - +1.1 775,246 + -0.7 775,338 + ABID97_RS03780 0.17 -0.7 775,339 - ABID97_RS03780 0.18 -3.1 775,339 - ABID97_RS03780 0.18 -0.6 775,573 - ABID97_RS03780 0.72 -0.6
Or see this region's nucleotide sequence