Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03570 and ABID97_RS03575 are separated by 418 nucleotides ABID97_RS03575 and ABID97_RS03580 overlap by 4 nucleotides
ABID97_RS03570: ABID97_RS03570 - MFS transporter, at 731,512 to 732,759
_RS03570
ABID97_RS03575: ABID97_RS03575 - type VI secretion system tip protein TssI/VgrG, at 733,178 to 735,763
_RS03575
ABID97_RS03580: ABID97_RS03580 - DUF4123 domain-containing protein, at 735,760 to 736,815
_RS03580
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 732.196 kb on + strand, within ABID97_RS03570 at 732.401 kb on + strand, within ABID97_RS03570 at 732.401 kb on + strand, within ABID97_RS03570 at 732.446 kb on + strand, within ABID97_RS03570 at 732.447 kb on - strand, within ABID97_RS03570 at 732.671 kb on + strand at 732.672 kb on - strand at 732.672 kb on - strand at 732.735 kb on - strand at 732.908 kb on + strand at 732.959 kb on - strand at 732.959 kb on - strand at 733.032 kb on + strand at 733.032 kb on + strand at 733.032 kb on + strand at 733.093 kb on - strand at 733.093 kb on - strand at 735.419 kb on + strand, within ABID97_RS03575 at 735.419 kb on + strand, within ABID97_RS03575 at 735.419 kb on + strand, within ABID97_RS03575 at 735.419 kb on + strand, within ABID97_RS03575 at 735.420 kb on - strand, within ABID97_RS03575 at 735.420 kb on - strand, within ABID97_RS03575 at 735.420 kb on - strand, within ABID97_RS03575 at 735.584 kb on + strand at 735.585 kb on - strand at 735.585 kb on - strand at 735.593 kb on + strand at 735.593 kb on + strand at 735.594 kb on - strand at 735.633 kb on - strand at 735.659 kb on + strand at 735.660 kb on - strand at 735.674 kb on + strand at 735.675 kb on - strand at 735.675 kb on - strand at 736.240 kb on + strand, within ABID97_RS03580 at 736.554 kb on - strand, within ABID97_RS03580 at 736.554 kb on - strand, within ABID97_RS03580 at 736.554 kb on - strand, within ABID97_RS03580 at 736.645 kb on + strand, within ABID97_RS03580 at 736.645 kb on + strand, within ABID97_RS03580 at 736.645 kb on + strand, within ABID97_RS03580 at 736.646 kb on - strand, within ABID97_RS03580 at 736.646 kb on - strand, within ABID97_RS03580 at 736.646 kb on - strand, within ABID97_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 732,196 + ABID97_RS03570 0.55 +0.1 732,401 + ABID97_RS03570 0.71 +1.6 732,401 + ABID97_RS03570 0.71 -0.1 732,446 + ABID97_RS03570 0.75 -0.6 732,447 - ABID97_RS03570 0.75 -0.1 732,671 + +0.2 732,672 - +0.9 732,672 - -2.2 732,735 - -2.2 732,908 + -1.2 732,959 - -1.8 732,959 - +0.1 733,032 + +0.5 733,032 + -0.5 733,032 + -0.6 733,093 - +0.3 733,093 - -3.5 735,419 + ABID97_RS03575 0.87 +1.0 735,419 + ABID97_RS03575 0.87 -2.9 735,419 + ABID97_RS03575 0.87 +0.3 735,419 + ABID97_RS03575 0.87 +0.5 735,420 - ABID97_RS03575 0.87 +0.3 735,420 - ABID97_RS03575 0.87 +5.0 735,420 - ABID97_RS03575 0.87 +0.4 735,584 + -0.2 735,585 - +0.3 735,585 - -0.2 735,593 + -0.4 735,593 + +1.0 735,594 - -4.0 735,633 - +0.2 735,659 + +0.6 735,660 - +0.4 735,674 + -0.3 735,675 - +0.8 735,675 - +0.0 736,240 + ABID97_RS03580 0.45 -1.3 736,554 - ABID97_RS03580 0.75 +2.2 736,554 - ABID97_RS03580 0.75 -0.7 736,554 - ABID97_RS03580 0.75 -0.1 736,645 + ABID97_RS03580 0.84 +0.6 736,645 + ABID97_RS03580 0.84 -0.4 736,645 + ABID97_RS03580 0.84 +2.4 736,646 - ABID97_RS03580 0.84 +0.9 736,646 - ABID97_RS03580 0.84 +1.2 736,646 - ABID97_RS03580 0.84 -0.1
Or see this region's nucleotide sequence