Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03400 and ABID97_RS03405 overlap by 20 nucleotides ABID97_RS03405 and ABID97_RS03410 overlap by 1 nucleotides ABID97_RS03410 and ABID97_RS03415 are separated by 336 nucleotides
ABID97_RS03400: ABID97_RS03400 - ABC transporter substrate-binding protein, at 690,723 to 691,691
_RS03400
ABID97_RS03405: ABID97_RS03405 - ABC transporter permease, at 691,672 to 692,550
_RS03405
ABID97_RS03410: ABID97_RS03410 - ABC transporter ATP-binding protein, at 692,550 to 693,335
_RS03410
ABID97_RS03415: ABID97_RS03415 - histidine utilization repressor, at 693,672 to 694,409
_RS03415
Position (kb) 692
693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 691.690 kb on - strand at 691.690 kb on - strand at 691.690 kb on - strand at 692.099 kb on - strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.366 kb on - strand, within ABID97_RS03405 at 692.366 kb on - strand, within ABID97_RS03405 at 692.439 kb on + strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405 at 692.811 kb on + strand, within ABID97_RS03410 at 692.811 kb on + strand, within ABID97_RS03410 at 693.244 kb on - strand, within ABID97_RS03410 at 693.333 kb on + strand at 693.333 kb on + strand at 693.334 kb on - strand at 693.857 kb on + strand, within ABID97_RS03415 at 694.110 kb on + strand, within ABID97_RS03415 at 694.111 kb on - strand, within ABID97_RS03415 at 694.176 kb on + strand, within ABID97_RS03415 at 694.177 kb on - strand, within ABID97_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 691,690 - -0.2 691,690 - +0.1 691,690 - -0.2 692,099 - ABID97_RS03405 0.49 +4.0 692,365 + ABID97_RS03405 0.79 -1.0 692,365 + ABID97_RS03405 0.79 -0.2 692,365 + ABID97_RS03405 0.79 +0.7 692,365 + ABID97_RS03405 0.79 +0.3 692,366 - ABID97_RS03405 0.79 -0.1 692,366 - ABID97_RS03405 0.79 +0.6 692,439 + ABID97_RS03405 0.87 +0.6 692,440 - ABID97_RS03405 0.87 +0.1 692,440 - ABID97_RS03405 0.87 +0.1 692,440 - ABID97_RS03405 0.87 +0.7 692,811 + ABID97_RS03410 0.33 +0.8 692,811 + ABID97_RS03410 0.33 +0.4 693,244 - ABID97_RS03410 0.88 +1.0 693,333 + -0.6 693,333 + -0.0 693,334 - -1.0 693,857 + ABID97_RS03415 0.25 -1.2 694,110 + ABID97_RS03415 0.59 -3.0 694,111 - ABID97_RS03415 0.59 -2.3 694,176 + ABID97_RS03415 0.68 -0.3 694,177 - ABID97_RS03415 0.68 -1.1
Or see this region's nucleotide sequence