Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03300 and ABID97_RS03305 overlap by 4 nucleotides ABID97_RS03305 and ABID97_RS03310 are separated by 65 nucleotides ABID97_RS03310 and ABID97_RS03315 overlap by 4 nucleotides ABID97_RS03315 and ABID97_RS03320 are separated by 228 nucleotides
ABID97_RS03300: ABID97_RS03300 - glutaminase, at 666,402 to 667,340
_RS03300
ABID97_RS03305: ABID97_RS03305 - DMT family transporter, at 667,337 to 668,236
_RS03305
ABID97_RS03310: ABID97_RS03310 - BON domain-containing protein, at 668,302 to 668,799
_RS03310
ABID97_RS03315: ABID97_RS03315 - flavin reductase family protein, at 668,796 to 669,305
_RS03315
ABID97_RS03320: ABID97_RS03320 - tripartite tricarboxylate transporter substrate binding protein, at 669,534 to 670,526
_RS03320
Position (kb) 668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 667.590 kb on + strand, within ABID97_RS03305 at 667.591 kb on - strand, within ABID97_RS03305 at 667.591 kb on - strand, within ABID97_RS03305 at 667.662 kb on + strand, within ABID97_RS03305 at 667.662 kb on + strand, within ABID97_RS03305 at 667.663 kb on - strand, within ABID97_RS03305 at 667.921 kb on - strand, within ABID97_RS03305 at 667.921 kb on - strand, within ABID97_RS03305 at 667.921 kb on - strand, within ABID97_RS03305 at 667.968 kb on + strand, within ABID97_RS03305 at 667.968 kb on + strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 667.969 kb on - strand, within ABID97_RS03305 at 668.445 kb on - strand, within ABID97_RS03310 at 668.445 kb on - strand, within ABID97_RS03310 at 668.543 kb on + strand, within ABID97_RS03310 at 668.550 kb on - strand, within ABID97_RS03310 at 668.642 kb on + strand, within ABID97_RS03310 at 668.642 kb on + strand, within ABID97_RS03310 at 668.642 kb on + strand, within ABID97_RS03310 at 668.643 kb on - strand, within ABID97_RS03310 at 668.643 kb on - strand, within ABID97_RS03310 at 668.643 kb on - strand, within ABID97_RS03310 at 668.815 kb on + strand at 668.816 kb on - strand at 668.816 kb on - strand at 669.341 kb on + strand at 669.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 667,590 + ABID97_RS03305 0.28 +1.1 667,591 - ABID97_RS03305 0.28 +5.7 667,591 - ABID97_RS03305 0.28 +0.4 667,662 + ABID97_RS03305 0.36 -3.1 667,662 + ABID97_RS03305 0.36 +1.1 667,663 - ABID97_RS03305 0.36 -0.7 667,921 - ABID97_RS03305 0.65 +0.2 667,921 - ABID97_RS03305 0.65 +0.3 667,921 - ABID97_RS03305 0.65 -0.6 667,968 + ABID97_RS03305 0.70 +0.3 667,968 + ABID97_RS03305 0.70 -0.1 667,969 - ABID97_RS03305 0.70 +0.7 667,969 - ABID97_RS03305 0.70 +0.5 667,969 - ABID97_RS03305 0.70 +0.2 667,969 - ABID97_RS03305 0.70 +0.4 667,969 - ABID97_RS03305 0.70 +0.6 667,969 - ABID97_RS03305 0.70 +0.7 667,969 - ABID97_RS03305 0.70 +1.1 668,445 - ABID97_RS03310 0.29 -0.1 668,445 - ABID97_RS03310 0.29 +0.9 668,543 + ABID97_RS03310 0.48 +0.5 668,550 - ABID97_RS03310 0.50 -1.5 668,642 + ABID97_RS03310 0.68 -0.1 668,642 + ABID97_RS03310 0.68 +0.7 668,642 + ABID97_RS03310 0.68 +0.7 668,643 - ABID97_RS03310 0.68 +0.4 668,643 - ABID97_RS03310 0.68 +1.7 668,643 - ABID97_RS03310 0.68 +0.8 668,815 + -0.5 668,816 - +1.8 668,816 - +0.5 669,341 + +0.3 669,341 + -0.1
Or see this region's nucleotide sequence