Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00870 and ABID97_RS00875 are separated by 167 nucleotides ABID97_RS00875 and ABID97_RS00880 are separated by 31 nucleotides ABID97_RS00880 and ABID97_RS00885 are separated by 151 nucleotides
ABID97_RS00870: ABID97_RS00870 - 2-dehydropantoate 2-reductase, at 175,384 to 176,292
_RS00870
ABID97_RS00875: ABID97_RS00875 - phytanoyl-CoA dioxygenase family protein, at 176,460 to 177,212
_RS00875
ABID97_RS00880: ABID97_RS00880 - AMP nucleosidase, at 177,244 to 178,761
_RS00880
ABID97_RS00885: ABID97_RS00885 - tripartite tricarboxylate transporter substrate binding protein, at 178,913 to 179,872
_RS00885
Position (kb) 177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 176.249 kb on + strand at 176.253 kb on - strand at 176.384 kb on - strand at 176.496 kb on + strand at 176.497 kb on - strand at 176.865 kb on + strand, within ABID97_RS00875 at 176.865 kb on + strand, within ABID97_RS00875 at 176.865 kb on + strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 176.866 kb on - strand, within ABID97_RS00875 at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.250 kb on + strand at 177.251 kb on - strand at 177.322 kb on + strand at 177.323 kb on - strand at 177.323 kb on - strand at 177.502 kb on + strand, within ABID97_RS00880 at 177.545 kb on - strand, within ABID97_RS00880 at 177.751 kb on + strand, within ABID97_RS00880 at 177.751 kb on + strand, within ABID97_RS00880 at 177.751 kb on + strand, within ABID97_RS00880 at 177.887 kb on - strand, within ABID97_RS00880 at 177.887 kb on - strand, within ABID97_RS00880 at 177.896 kb on - strand, within ABID97_RS00880 at 177.953 kb on - strand, within ABID97_RS00880 at 178.174 kb on - strand, within ABID97_RS00880 at 178.253 kb on - strand, within ABID97_RS00880 at 178.270 kb on + strand, within ABID97_RS00880 at 178.270 kb on + strand, within ABID97_RS00880 at 178.271 kb on - strand at 178.271 kb on - strand, within ABID97_RS00880 at 178.271 kb on - strand, within ABID97_RS00880 at 178.271 kb on - strand, within ABID97_RS00880 at 178.271 kb on - strand, within ABID97_RS00880 at 178.271 kb on - strand, within ABID97_RS00880 at 178.561 kb on + strand, within ABID97_RS00880 at 178.637 kb on - strand at 178.637 kb on - strand at 178.793 kb on - strand at 179.150 kb on + strand, within ABID97_RS00885 at 179.150 kb on + strand, within ABID97_RS00885 at 179.151 kb on - strand, within ABID97_RS00885 at 179.151 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885 at 179.409 kb on - strand, within ABID97_RS00885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 176,249 + -0.1 176,253 - +0.6 176,384 - +0.4 176,496 + +0.1 176,497 - +0.8 176,865 + ABID97_RS00875 0.54 +0.6 176,865 + ABID97_RS00875 0.54 -1.3 176,865 + ABID97_RS00875 0.54 -1.4 176,866 - ABID97_RS00875 0.54 +0.1 176,866 - ABID97_RS00875 0.54 -0.9 176,866 - ABID97_RS00875 0.54 -0.1 176,866 - ABID97_RS00875 0.54 -0.0 177,250 + +0.0 177,250 + +0.0 177,250 + +0.7 177,250 + +0.8 177,250 + +0.0 177,251 - -0.1 177,322 + -1.1 177,323 - -1.7 177,323 - -4.4 177,502 + ABID97_RS00880 0.17 -1.6 177,545 - ABID97_RS00880 0.20 -3.4 177,751 + ABID97_RS00880 0.33 -2.4 177,751 + ABID97_RS00880 0.33 -2.4 177,751 + ABID97_RS00880 0.33 -3.5 177,887 - ABID97_RS00880 0.42 -3.5 177,887 - ABID97_RS00880 0.42 -4.4 177,896 - ABID97_RS00880 0.43 -4.0 177,953 - ABID97_RS00880 0.47 -1.6 178,174 - ABID97_RS00880 0.61 -3.2 178,253 - ABID97_RS00880 0.66 -1.9 178,270 + ABID97_RS00880 0.68 +0.7 178,270 + ABID97_RS00880 0.68 -3.2 178,271 - +1.1 178,271 - ABID97_RS00880 0.68 -0.5 178,271 - ABID97_RS00880 0.68 -1.9 178,271 - ABID97_RS00880 0.68 -2.8 178,271 - ABID97_RS00880 0.68 -0.9 178,271 - ABID97_RS00880 0.68 -3.6 178,561 + ABID97_RS00880 0.87 -4.2 178,637 - -3.1 178,637 - -2.9 178,793 - +1.8 179,150 + ABID97_RS00885 0.25 +0.4 179,150 + ABID97_RS00885 0.25 +0.4 179,151 - ABID97_RS00885 0.25 -2.2 179,151 - ABID97_RS00885 0.25 +0.9 179,409 - ABID97_RS00885 0.52 -0.1 179,409 - ABID97_RS00885 0.52 -3.5 179,409 - ABID97_RS00885 0.52 +0.7 179,409 - ABID97_RS00885 0.52 -0.4
Or see this region's nucleotide sequence