Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04305 and PS417_04310 are separated by 27 nucleotides PS417_04310 and PS417_04315 are separated by 1 nucleotides PS417_04315 and PS417_04320 are separated by 33 nucleotides
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423
_04310
PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036
_04315
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 966.965 kb on + strand at 967.039 kb on + strand, within PS417_04310 at 967.039 kb on + strand, within PS417_04310 at 967.040 kb on - strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.074 kb on - strand, within PS417_04310 at 967.424 kb on + strand at 967.425 kb on - strand at 967.431 kb on + strand at 967.431 kb on + strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.433 kb on + strand at 967.433 kb on + strand at 967.458 kb on + strand at 967.478 kb on + strand at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.935 kb on + strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.945 kb on - strand, within PS417_04315 at 967.966 kb on - strand, within PS417_04315 at 967.980 kb on + strand at 967.981 kb on - strand at 967.988 kb on + strand at 968.017 kb on - strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.138 kb on - strand at 968.148 kb on - strand at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 966,965 + +3.9 967,039 + PS417_04310 0.10 -0.0 967,039 + PS417_04310 0.10 -0.4 967,040 - PS417_04310 0.10 -0.1 967,073 + PS417_04310 0.18 -0.1 967,073 + PS417_04310 0.18 +2.2 967,074 - PS417_04310 0.18 -0.5 967,424 + -0.4 967,425 - -0.0 967,431 + +0.2 967,431 + -0.5 967,432 - -1.0 967,432 - +0.3 967,432 - -0.4 967,433 + -0.2 967,433 + -0.7 967,458 + +2.6 967,478 + -0.3 967,507 - PS417_04315 0.13 -1.3 967,507 - PS417_04315 0.13 -1.9 967,507 - PS417_04315 0.13 -1.0 967,527 + PS417_04315 0.17 -2.0 967,527 + PS417_04315 0.17 +0.2 967,935 + PS417_04315 0.83 -0.2 967,936 - PS417_04315 0.83 +1.4 967,936 - PS417_04315 0.83 +0.2 967,945 - PS417_04315 0.85 -0.8 967,966 - PS417_04315 0.88 -1.1 967,980 + -0.3 967,981 - -0.7 967,988 + +0.6 968,017 - -2.1 968,059 + -0.4 968,059 + +3.6 968,059 + +0.3 968,059 + -1.6 968,138 - -0.2 968,148 - +1.0 968,432 + PS417_04320 0.40 +1.2 968,432 + +0.6 968,432 + PS417_04320 0.40 -1.0 968,433 - PS417_04320 0.41 -0.7 968,454 + PS417_04320 0.43 +0.5 968,534 + PS417_04320 0.52 -0.4 968,961 + +0.4 968,979 - +0.0 968,979 - -1.4
Or see this region's nucleotide sequence