Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25040 and PS417_25045 are separated by 14 nucleotides PS417_25045 and PS417_25055 are separated by 717 nucleotides
PS417_25040: PS417_25040 - hypothetical protein, at 5,431,016 to 5,431,270
_25040
PS417_25045: PS417_25045 - hypothetical protein, at 5,431,285 to 5,431,584
_25045
PS417_25055: PS417_25055 - transposase, at 5,432,302 to 5,432,499
_25055
Position (kb) 5431
5432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5430.331 kb on + strand at 5430.331 kb on + strand at 5430.332 kb on - strand at 5430.332 kb on - strand at 5430.332 kb on - strand at 5430.390 kb on + strand at 5430.390 kb on + strand at 5430.391 kb on - strand at 5430.409 kb on + strand at 5430.409 kb on + strand at 5430.467 kb on + strand at 5430.467 kb on + strand at 5430.467 kb on + strand at 5430.468 kb on - strand at 5430.468 kb on - strand at 5430.485 kb on + strand at 5430.492 kb on - strand at 5430.506 kb on - strand at 5430.550 kb on + strand at 5430.550 kb on + strand at 5430.551 kb on - strand at 5430.624 kb on + strand at 5430.627 kb on + strand at 5430.628 kb on - strand at 5430.736 kb on + strand at 5430.781 kb on + strand at 5430.782 kb on - strand at 5430.782 kb on - strand at 5430.796 kb on + strand at 5430.796 kb on + strand at 5430.952 kb on + strand at 5430.952 kb on + strand at 5430.953 kb on - strand at 5430.953 kb on - strand at 5430.953 kb on - strand at 5430.954 kb on + strand at 5430.955 kb on - strand at 5430.955 kb on - strand at 5430.955 kb on - strand at 5430.961 kb on - strand at 5431.062 kb on + strand at 5431.062 kb on + strand, within PS417_25040 at 5431.062 kb on + strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.072 kb on - strand, within PS417_25040 at 5431.072 kb on - strand, within PS417_25040 at 5431.175 kb on + strand, within PS417_25040 at 5431.184 kb on + strand, within PS417_25040 at 5431.264 kb on + strand at 5431.286 kb on + strand at 5431.286 kb on + strand at 5431.286 kb on + strand at 5431.287 kb on - strand at 5431.287 kb on - strand at 5431.287 kb on - strand at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.375 kb on + strand, within PS417_25045 at 5431.375 kb on + strand, within PS417_25045 at 5431.470 kb on + strand, within PS417_25045 at 5431.470 kb on + strand, within PS417_25045 at 5431.471 kb on - strand, within PS417_25045 at 5431.471 kb on - strand, within PS417_25045 at 5431.485 kb on + strand, within PS417_25045 at 5431.486 kb on - strand, within PS417_25045 at 5431.486 kb on - strand, within PS417_25045 at 5431.525 kb on + strand, within PS417_25045 at 5431.526 kb on - strand, within PS417_25045 at 5431.526 kb on - strand, within PS417_25045 at 5431.559 kb on + strand at 5431.559 kb on + strand at 5431.611 kb on + strand at 5431.612 kb on - strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.697 kb on + strand at 5431.697 kb on + strand at 5431.698 kb on - strand at 5431.698 kb on - strand at 5431.775 kb on + strand at 5431.838 kb on + strand at 5431.867 kb on - strand at 5431.951 kb on - strand at 5431.951 kb on - strand at 5431.967 kb on + strand at 5431.967 kb on + strand at 5431.980 kb on + strand at 5431.980 kb on + strand at 5432.102 kb on + strand at 5432.234 kb on + strand at 5432.234 kb on + strand at 5432.235 kb on - strand at 5432.257 kb on + strand at 5432.257 kb on + strand at 5432.264 kb on + strand at 5432.264 kb on + strand at 5432.356 kb on - strand, within PS417_25055 at 5432.399 kb on + strand, within PS417_25055 at 5432.400 kb on - strand, within PS417_25055 at 5432.400 kb on - strand, within PS417_25055 at 5432.408 kb on + strand, within PS417_25055 at 5432.408 kb on + strand, within PS417_25055 at 5432.483 kb on + strand at 5432.483 kb on + strand at 5432.489 kb on - strand at 5432.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 5,430,331 + +0.2 5,430,331 + +0.7 5,430,332 - +0.8 5,430,332 - -0.2 5,430,332 - +0.4 5,430,390 + -0.4 5,430,390 + +0.2 5,430,391 - -0.2 5,430,409 + +0.1 5,430,409 + +0.3 5,430,467 + +0.6 5,430,467 + +0.4 5,430,467 + +0.0 5,430,468 - -0.1 5,430,468 - -0.1 5,430,485 + +1.9 5,430,492 - +0.0 5,430,506 - +0.0 5,430,550 + +0.7 5,430,550 + -1.0 5,430,551 - +0.9 5,430,624 + +0.4 5,430,627 + +0.0 5,430,628 - -0.3 5,430,736 + -0.6 5,430,781 + -0.1 5,430,782 - +0.7 5,430,782 - +1.2 5,430,796 + -1.8 5,430,796 + -0.1 5,430,952 + +0.3 5,430,952 + +0.7 5,430,953 - -0.1 5,430,953 - -0.7 5,430,953 - +0.1 5,430,954 + -1.8 5,430,955 - -0.1 5,430,955 - -3.0 5,430,955 - -1.7 5,430,961 - +0.6 5,431,062 + +1.6 5,431,062 + PS417_25040 0.18 +0.7 5,431,062 + PS417_25040 0.18 +0.5 5,431,063 - PS417_25040 0.18 +0.1 5,431,063 - PS417_25040 0.18 -1.0 5,431,063 - PS417_25040 0.18 +0.0 5,431,063 - PS417_25040 0.18 +0.0 5,431,063 - PS417_25040 0.18 +0.2 5,431,071 + PS417_25040 0.22 +0.5 5,431,071 + PS417_25040 0.22 +0.0 5,431,071 + PS417_25040 0.22 +1.6 5,431,072 - PS417_25040 0.22 -0.9 5,431,072 - PS417_25040 0.22 +0.5 5,431,175 + PS417_25040 0.62 -0.4 5,431,184 + PS417_25040 0.66 +0.4 5,431,264 + -0.5 5,431,286 + -0.5 5,431,286 + -0.1 5,431,286 + -0.2 5,431,287 - +0.7 5,431,287 - +0.1 5,431,287 - -1.0 5,431,373 + PS417_25045 0.29 -3.2 5,431,373 + PS417_25045 0.29 +1.4 5,431,373 + PS417_25045 0.29 +1.6 5,431,373 + PS417_25045 0.29 -0.2 5,431,374 - PS417_25045 0.30 +0.3 5,431,374 - PS417_25045 0.30 +1.7 5,431,374 - PS417_25045 0.30 +1.1 5,431,375 + PS417_25045 0.30 +2.3 5,431,375 + PS417_25045 0.30 -2.5 5,431,470 + PS417_25045 0.62 -0.3 5,431,470 + PS417_25045 0.62 -2.9 5,431,471 - PS417_25045 0.62 -0.1 5,431,471 - PS417_25045 0.62 +0.7 5,431,485 + PS417_25045 0.67 +0.2 5,431,486 - PS417_25045 0.67 -1.2 5,431,486 - PS417_25045 0.67 +0.4 5,431,525 + PS417_25045 0.80 +0.3 5,431,526 - PS417_25045 0.80 -0.0 5,431,526 - PS417_25045 0.80 -0.2 5,431,559 + -0.0 5,431,559 + -0.5 5,431,611 + +0.3 5,431,612 - +1.8 5,431,628 + +0.5 5,431,628 + -0.1 5,431,629 - -1.2 5,431,629 - +0.5 5,431,697 + +0.0 5,431,697 + +0.4 5,431,698 - +1.1 5,431,698 - +0.3 5,431,775 + +0.3 5,431,838 + +0.4 5,431,867 - +1.4 5,431,951 - +0.3 5,431,951 - +1.2 5,431,967 + +0.6 5,431,967 + +1.2 5,431,980 + +0.9 5,431,980 + -0.1 5,432,102 + +0.0 5,432,234 + +0.9 5,432,234 + -0.1 5,432,235 - -0.2 5,432,257 + -1.0 5,432,257 + +0.9 5,432,264 + +0.5 5,432,264 + +1.0 5,432,356 - PS417_25055 0.27 +0.0 5,432,399 + PS417_25055 0.49 +0.6 5,432,400 - PS417_25055 0.49 -0.8 5,432,400 - PS417_25055 0.49 -1.9 5,432,408 + PS417_25055 0.54 +0.9 5,432,408 + PS417_25055 0.54 -0.0 5,432,483 + -0.7 5,432,483 + +0.6 5,432,489 - +0.9 5,432,547 + +0.1
Or see this region's nucleotide sequence