Strain Fitness in Pseudomonas simiae WCS417 around PS417_02385

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02380 and PS417_02385 are separated by 205 nucleotidesPS417_02385 and PS417_02390 are separated by 45 nucleotides PS417_02380: PS417_02380 - serine/threonine protein phosphatase, at 543,790 to 544,605 _02380 PS417_02385: PS417_02385 - esterase, at 544,811 to 545,419 _02385 PS417_02390: PS417_02390 - DNA topoisomerase IV subunit B, at 545,465 to 547,372 _02390 Position (kb) 544 545 546Strain fitness (log2 ratio) -1 0 1 2at 544.575 kb on + strandat 544.603 kb on + strandat 544.606 kb on + strandat 544.606 kb on + strandat 544.606 kb on + strandat 544.607 kb on - strandat 544.607 kb on - strandat 544.607 kb on - strandat 544.613 kb on - strandat 544.732 kb on + strandat 544.732 kb on + strandat 544.733 kb on - strandat 544.829 kb on + strandat 544.829 kb on + strandat 544.829 kb on + strandat 544.830 kb on - strandat 544.830 kb on - strandat 544.831 kb on + strandat 544.832 kb on - strandat 545.024 kb on + strand, within PS417_02385at 545.027 kb on + strand, within PS417_02385

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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544,575 + -1.0
544,603 + -0.3
544,606 + +2.1
544,606 + +0.3
544,606 + +2.3
544,607 - +0.7
544,607 - -0.1
544,607 - -1.6
544,613 - -0.3
544,732 + +0.7
544,732 + +0.3
544,733 - -0.2
544,829 + +0.5
544,829 + -0.8
544,829 + +0.1
544,830 - -0.1
544,830 - -0.0
544,831 + -0.5
544,832 - -0.2
545,024 + PS417_02385 0.35 +0.7
545,027 + PS417_02385 0.35 +2.3

Or see this region's nucleotide sequence