Strain Fitness in Pseudomonas simiae WCS417 around PS417_20435

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
4,432,874	+		PS417_20425	0.79	-0.4
4,432,920	+		PS417_20425	0.86	-0.7
4,432,921	-		PS417_20425	0.87	+0.1
4,432,921	-		PS417_20425	0.87	+0.4
4,433,114	+				-0.1
4,433,114	+				-0.5
4,433,114	+				+0.3
4,433,115	-				-0.9
4,433,126	+				+0.2
4,433,126	+				-0.6
4,433,126	+				+1.4
4,433,126	+				-0.0
4,433,126	+				-0.2
4,433,126	+				-0.1
4,433,127	-				+1.3
4,433,193	-		PS417_20430	0.10	+0.2
4,433,270	-		PS417_20430	0.23	+1.5
4,433,334	+		PS417_20430	0.34	-0.1
4,433,361	-		PS417_20430	0.38	+0.1
4,433,528	-		PS417_20430	0.66	+0.0
4,433,548	+				+3.4
4,433,549	-		PS417_20430	0.70	-0.3
4,433,549	-		PS417_20430	0.70	+0.2
4,433,552	+		PS417_20430	0.71	-2.4
4,433,552	+		PS417_20430	0.71	+0.8
4,433,552	+		PS417_20430	0.71	+1.2
4,433,553	-		PS417_20430	0.71	-1.0
4,433,553	-		PS417_20430	0.71	-0.1
4,433,597	+		PS417_20430	0.78	-0.3
4,433,598	-		PS417_20430	0.78	-0.3
4,433,598	-		PS417_20430	0.78	-0.6
4,433,726	+				+0.4
4,433,726	+				-1.2
4,433,726	+				-0.0
4,433,727	-				-1.1
4,433,727	-				-1.6
4,433,727	-				+0.6
4,433,728	+				-0.4
4,433,728	+				-1.2
4,433,729	-				+1.0
4,433,729	-				-0.9
4,433,729	-				-0.9
4,433,760	+				+0.5
4,433,760	+				+0.7
4,433,761	-				-1.4
4,433,763	+				-2.5
4,433,930	-				+0.7
4,434,028	+				+0.4
4,434,041	-				+0.4
4,434,041	-				-0.6
4,434,046	+				+0.0
4,434,046	+				+1.2
4,434,046	+				-0.7
4,434,046	+				-0.9
4,434,047	-				-0.5
4,434,047	-				-0.6
4,434,047	-				+0.0
4,434,142	+				-0.5
4,434,161	+				-0.0
4,434,161	+				+1.5
4,434,162	-				-0.0
4,434,228	+		PS417_20435	0.12	-0.2
4,434,358	+		PS417_20435	0.15	-0.1
4,434,358	+		PS417_20435	0.15	-0.1
4,434,358	+		PS417_20435	0.15	-0.3
4,434,358	+		PS417_20435	0.15	+0.1
4,434,358	+		PS417_20435	0.15	+0.0
4,434,359	-		PS417_20435	0.15	-0.2
4,434,359	-		PS417_20435	0.15	-0.1
4,434,359	-		PS417_20435	0.15	-1.3
4,434,359	-		PS417_20435	0.15	+0.6
4,434,362	+		PS417_20435	0.15	-0.3
4,434,362	+		PS417_20435	0.15	-0.9
4,434,362	+		PS417_20435	0.15	+1.4
4,434,362	+		PS417_20435	0.15	-0.3
4,434,362	+		PS417_20435	0.15	-0.1
4,434,362	+		PS417_20435	0.15	+0.6
4,434,362	+		PS417_20435	0.15	-0.3
4,434,362	+		PS417_20435	0.15	+0.2
4,434,363	-		PS417_20435	0.15	+0.4
4,434,363	-		PS417_20435	0.15	+0.2
4,434,363	-		PS417_20435	0.15	+0.6
4,434,363	-		PS417_20435	0.15	+0.4
4,434,363	-		PS417_20435	0.15	-0.2
4,434,363	-		PS417_20435	0.15	+1.4
4,434,363	-		PS417_20435	0.15	+0.8
4,434,363	-		PS417_20435	0.15	+0.9
4,434,363	-		PS417_20435	0.15	-0.0
4,434,363	-		PS417_20435	0.15	+1.0
4,434,363	-		PS417_20435	0.15	+0.3
4,434,363	-		PS417_20435	0.15	+0.8
4,434,363	-		PS417_20435	0.15	-0.0
4,434,363	-		PS417_20435	0.15	-0.3
4,434,363	-		PS417_20435	0.15	-0.8
4,434,363	-		PS417_20435	0.15	+0.3
4,434,366	+		PS417_20435	0.15	+1.0
4,434,366	+		PS417_20435	0.15	+0.1
4,434,366	+		PS417_20435	0.15	+0.1
4,434,367	-		PS417_20435	0.15	+1.4
4,434,486	-		PS417_20435	0.19	+0.2
4,434,507	+		PS417_20435	0.19	-0.8
4,434,543	-		PS417_20435	0.20	+0.6
4,434,543	-		PS417_20435	0.20	+0.5
4,434,543	-		PS417_20435	0.20	-1.6
4,434,595	+		PS417_20435	0.22	-0.6
4,434,595	+		PS417_20435	0.22	+1.8
4,434,595	+		PS417_20435	0.22	+0.2
4,434,595	+		PS417_20435	0.22	-2.1
4,434,596	-		PS417_20435	0.22	-1.3
4,434,596	-		PS417_20435	0.22	+0.4
4,434,658	+		PS417_20435	0.24	+0.2
4,434,659	-		PS417_20435	0.24	+1.5
4,434,659	-		PS417_20435	0.24	-0.5
4,434,718	-		PS417_20435	0.25	-1.2
4,434,718	-		PS417_20435	0.25	-0.3
4,434,718	-		PS417_20435	0.25	-0.5
4,434,718	-		PS417_20435	0.25	+0.2
4,434,870	+		PS417_20435	0.30	+0.4
4,434,871	-		PS417_20435	0.30	-1.3
4,434,950	+		PS417_20435	0.32	+0.6
4,434,950	+		PS417_20435	0.32	-0.6
4,434,950	+		PS417_20435	0.32	+0.6
4,434,953	+		PS417_20435	0.32	-1.8
4,434,953	+		PS417_20435	0.32	+0.6
4,434,954	-		PS417_20435	0.32	-0.5
4,435,029	-		PS417_20435	0.34	+1.4
4,435,029	-		PS417_20435	0.34	-1.3
4,435,036	-		PS417_20435	0.34	+0.8
4,435,065	+		PS417_20435	0.35	+0.4
4,435,065	+		PS417_20435	0.35	-0.2
4,435,065	+		PS417_20435	0.35	-0.8
4,435,066	-		PS417_20435	0.35	+0.4
4,435,066	-		PS417_20435	0.35	+0.9
4,435,066	-		PS417_20435	0.35	+0.1
4,435,067	+		PS417_20435	0.35	+2.0
4,435,067	+		PS417_20435	0.35	+0.1
4,435,067	+		PS417_20435	0.35	-0.3
4,435,067	+		PS417_20435	0.35	-0.5
4,435,067	+		PS417_20435	0.35	-0.3
4,435,068	-		PS417_20435	0.35	-0.8
4,435,068	-		PS417_20435	0.35	+0.7
4,435,068	-		PS417_20435	0.35	-1.2
4,435,068	-		PS417_20435	0.35	-3.0
4,435,068	-		PS417_20435	0.35	+0.1
4,435,068	-		PS417_20435	0.35	-0.7
4,435,068	-		PS417_20435	0.35	+0.5
4,435,078	-		PS417_20435	0.36	-0.7
4,435,151	+		PS417_20435	0.38	+0.3
4,435,194	+		PS417_20435	0.39	+0.8
4,435,194	+		PS417_20435	0.39	+1.5
4,435,195	-		PS417_20435	0.39	-1.0
4,435,195	-				-0.6
4,435,195	-		PS417_20435	0.39	+0.8
4,435,323	-		PS417_20435	0.42	+0.1
4,435,358	+		PS417_20435	0.43	-1.2
4,435,359	-		PS417_20435	0.43	+0.8
4,435,384	+		PS417_20435	0.44	-0.8
4,435,385	-		PS417_20435	0.44	+0.4
4,435,392	-		PS417_20435	0.44	-1.0
4,435,406	+		PS417_20435	0.45	+0.4
4,435,406	+		PS417_20435	0.45	+1.1
4,435,406	+		PS417_20435	0.45	+0.4
4,435,406	+		PS417_20435	0.45	+0.2
4,435,407	-		PS417_20435	0.45	+0.6
4,435,407	-		PS417_20435	0.45	-0.1
4,435,407	-		PS417_20435	0.45	-0.5
4,435,407	-		PS417_20435	0.45	+0.1
4,435,430	+		PS417_20435	0.45	-0.6
4,435,430	+		PS417_20435	0.45	+0.4
4,435,430	+		PS417_20435	0.45	+1.6
4,435,430	+		PS417_20435	0.45	+0.2
4,435,430	+		PS417_20435	0.45	-0.1
4,435,431	-		PS417_20435	0.45	+2.1
4,435,431	-		PS417_20435	0.45	+0.0
4,435,431	-		PS417_20435	0.45	+0.4
4,435,431	-		PS417_20435	0.45	+0.1
4,435,431	-		PS417_20435	0.45	-0.2
4,435,465	-				+0.4
4,435,518	+		PS417_20435	0.48	+1.1
4,435,519	-		PS417_20435	0.48	+0.5
4,435,519	-		PS417_20435	0.48	-0.6
4,435,547	+		PS417_20435	0.49	+0.0
4,435,547	+		PS417_20435	0.49	+1.7
4,435,548	-		PS417_20435	0.49	-0.0
4,435,548	-		PS417_20435	0.49	-1.7
4,435,548	-		PS417_20435	0.49	+1.1
4,435,548	-		PS417_20435	0.49	+0.5
4,435,548	-		PS417_20435	0.49	-1.4
4,435,574	+		PS417_20435	0.50	+0.4
4,435,574	+		PS417_20435	0.50	+0.1
4,435,574	+		PS417_20435	0.50	-1.4
4,435,578	+		PS417_20435	0.50	+0.6
4,435,579	-		PS417_20435	0.50	+0.7
4,435,616	+		PS417_20435	0.51	-0.6
4,435,617	-		PS417_20435	0.51	+0.0
4,435,617	-		PS417_20435	0.51	-0.4
4,435,617	-		PS417_20435	0.51	+0.4
4,435,649	+		PS417_20435	0.52	+0.6
4,435,649	+		PS417_20435	0.52	+0.5
4,435,649	+		PS417_20435	0.52	+0.7
4,435,649	+		PS417_20435	0.52	-0.8
4,435,649	+		PS417_20435	0.52	-0.3
4,435,649	+		PS417_20435	0.52	-1.8
4,435,649	+		PS417_20435	0.52	+1.1
4,435,649	+		PS417_20435	0.52	+0.3
4,435,649	+		PS417_20435	0.52	-1.6
4,435,650	-		PS417_20435	0.52	-0.0
4,435,650	-		PS417_20435	0.52	+0.1
4,435,650	-		PS417_20435	0.52	+0.7
4,435,650	-		PS417_20435	0.52	-0.1
4,435,650	-		PS417_20435	0.52	-0.2
4,435,650	-		PS417_20435	0.52	+0.7
4,435,650	-		PS417_20435	0.52	-1.2
4,435,652	+		PS417_20435	0.52	+0.2
4,435,669	-		PS417_20435	0.52	-0.3
4,435,669	-		PS417_20435	0.52	+0.3
4,435,673	+		PS417_20435	0.52	+1.5
4,435,674	-		PS417_20435	0.52	+0.6
4,435,674	-		PS417_20435	0.52	-1.4
4,435,677	+		PS417_20435	0.52	-0.2
4,435,678	-		PS417_20435	0.52	+0.3
4,435,724	+		PS417_20435	0.54	+0.8
4,435,817	+		PS417_20435	0.56	-1.4
4,435,818	-		PS417_20435	0.56	-0.2
4,435,916	+		PS417_20435	0.59	-0.3
4,435,917	-		PS417_20435	0.59	+1.4
4,436,015	+		PS417_20435	0.62	-1.3
4,436,015	+		PS417_20435	0.62	-0.3
4,436,016	-		PS417_20435	0.62	+1.4
4,436,016	-		PS417_20435	0.62	+0.0
4,436,016	-		PS417_20435	0.62	+1.6
4,436,109	-				+2.4
4,436,214	+		PS417_20435	0.68	-2.2
4,436,215	-		PS417_20435	0.68	+0.1
4,436,216	+		PS417_20435	0.68	+0.7
4,436,216	+		PS417_20435	0.68	+0.1
4,436,216	+		PS417_20435	0.68	+0.4
4,436,216	+		PS417_20435	0.68	+0.4
4,436,216	+		PS417_20435	0.68	+0.4
4,436,216	+		PS417_20435	0.68	+0.4
4,436,217	-		PS417_20435	0.68	+0.4
4,436,217	-		PS417_20435	0.68	+0.4
4,436,217	-		PS417_20435	0.68	+0.8
4,436,217	-		PS417_20435	0.68	+0.4
4,436,217	-		PS417_20435	0.68	+0.5
4,436,245	+		PS417_20435	0.68	+0.7
4,436,246	-		PS417_20435	0.68	-1.1
4,436,352	+				-0.2
4,436,352	+		PS417_20435	0.71	+0.7
4,436,391	-		PS417_20435	0.73	+0.4
4,436,391	-		PS417_20435	0.73	+0.7
4,436,391	-		PS417_20435	0.73	+0.5
4,436,490	+		PS417_20435	0.75	-0.4
4,436,490	+		PS417_20435	0.75	+0.7
4,436,501	+		PS417_20435	0.76	+1.4
4,436,652	-		PS417_20435	0.80	-2.7
4,436,721	+		PS417_20435	0.82	+4.0
4,436,726	+				-0.6
4,436,785	-				-0.2
4,437,006	+		PS417_20435	0.90	-0.6
4,437,032	+				+0.1
4,437,033	-				-0.3
4,437,151	+				-0.1
4,437,371	+				-0.5
4,437,465	+				+0.1
4,437,600	+				-0.8
4,437,600	+				+1.2
4,437,619	-				-1.8
4,437,776	-				+0.2
4,437,844	+				+1.4
4,437,845	-				+0.1
4,437,845	-				+0.2
4,438,038	-				+0.2
4,438,181	+				+0.1