Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16675

Experiment: marine_broth_2216 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 with nitrite 20 mM
3,876,454	+		CA264_16670	0.62	+0.1
3,876,454	+		CA264_16670	0.62	-0.4
3,876,455	-		CA264_16670	0.62	-0.0
3,876,455	-		CA264_16670	0.62	-0.2
3,876,502	-		CA264_16670	0.64	+0.6
3,876,532	-		CA264_16670	0.66	+0.1
3,876,532	-		CA264_16670	0.66	+1.4
3,876,575	-		CA264_16670	0.68	+1.1
3,876,584	-		CA264_16670	0.68	-0.9
3,876,584	-		CA264_16670	0.68	+1.1
3,876,596	+		CA264_16670	0.69	+0.1
3,876,614	+		CA264_16670	0.69	-0.4
3,876,615	-		CA264_16670	0.69	+1.1
3,876,615	-		CA264_16670	0.69	-0.3
3,876,617	+		CA264_16670	0.70	-0.6
3,876,617	+		CA264_16670	0.70	-0.9
3,876,617	+		CA264_16670	0.70	+0.1
3,876,618	-		CA264_16670	0.70	-0.7
3,876,618	-		CA264_16670	0.70	+1.8
3,876,626	+		CA264_16670	0.70	-0.1
3,876,627	-		CA264_16670	0.70	-0.7
3,876,679	+		CA264_16670	0.73	+0.7
3,876,925	-		CA264_16670	0.84	+2.9
3,877,004	+		CA264_16670	0.88	-0.2
3,877,005	-		CA264_16670	0.88	-1.7
3,877,127	+				+0.4
3,877,128	-				-0.2
3,877,142	+				-0.6
3,877,142	-				+0.9
3,877,205	-				-0.3
3,877,208	-				-0.3
3,877,234	-				+0.1
3,877,234	-				-0.8
3,877,234	-				+0.6
3,877,234	-				-0.1
3,877,236	-				-0.7
3,877,237	+				-0.6
3,877,238	-				+1.5
3,877,251	+				+0.1
3,877,251	+				+0.4
3,877,280	+				-0.3
3,877,280	+				-0.4
3,877,355	+				-0.5
3,877,356	-				+0.1
3,877,364	-				+0.1
3,877,364	-				+1.8
3,877,364	-				-0.1
3,877,381	+				+0.6
3,877,381	+				+0.3
3,877,390	-				+0.1
3,877,421	+				+0.3
3,877,422	-				+0.2
3,877,422	-				+1.8
3,877,427	+				+0.7
3,877,427	+				+0.2
3,877,449	+				+0.7
3,877,536	+		CA264_16675	0.11	-0.6
3,877,536	+		CA264_16675	0.11	-1.5
3,877,536	+		CA264_16675	0.11	-0.8
3,877,537	-		CA264_16675	0.11	+0.2
3,877,538	+		CA264_16675	0.11	-0.0
3,877,539	-		CA264_16675	0.11	+0.0
3,877,545	+		CA264_16675	0.12	-0.1
3,877,545	+		CA264_16675	0.12	+0.6
3,877,546	-		CA264_16675	0.12	-0.1
3,877,546	-		CA264_16675	0.12	+0.1
3,877,575	-		CA264_16675	0.14	-0.8
3,877,706	+		CA264_16675	0.24	-1.0
3,877,714	+		CA264_16675	0.24	+0.4
3,877,768	+		CA264_16675	0.28	-0.2
3,877,769	-		CA264_16675	0.29	+0.4
3,877,798	+		CA264_16675	0.31	+0.1
3,877,798	+		CA264_16675	0.31	-0.1
3,877,799	-		CA264_16675	0.31	-0.9
3,877,803	-		CA264_16675	0.31	+0.8
3,877,803	-		CA264_16675	0.31	+0.3
3,877,842	-		CA264_16675	0.34	-0.1
3,877,842	-		CA264_16675	0.34	-0.5
3,877,850	-		CA264_16675	0.35	+1.4
3,877,858	+		CA264_16675	0.35	+0.2
3,877,859	-		CA264_16675	0.35	-0.7
3,877,902	+		CA264_16675	0.39	-0.1
3,877,902	+		CA264_16675	0.39	-0.5
3,877,903	-		CA264_16675	0.39	+0.8
3,877,903	-		CA264_16675	0.39	+0.0
3,877,976	+		CA264_16675	0.44	+0.2
3,878,029	-		CA264_16675	0.48	-0.3
3,878,057	+		CA264_16675	0.50	-0.0
3,878,058	-		CA264_16675	0.50	-1.4
3,878,103	+		CA264_16675	0.54	-0.5
3,878,103	+		CA264_16675	0.54	-0.5
3,878,104	-		CA264_16675	0.54	-0.3
3,878,185	-		CA264_16675	0.60	+0.1
3,878,185	-		CA264_16675	0.60	+0.3
3,878,227	+		CA264_16675	0.63	-0.5
3,878,227	+		CA264_16675	0.63	+0.4
3,878,228	-		CA264_16675	0.63	+0.2
3,878,277	-		CA264_16675	0.67	+0.6
3,878,277	-		CA264_16675	0.67	-1.5
3,878,300	+		CA264_16675	0.68	-0.1
3,878,300	+		CA264_16675	0.68	-0.1
3,878,301	-		CA264_16675	0.68	+0.4
3,878,301	-		CA264_16675	0.68	+1.8
3,878,327	-		CA264_16675	0.70	+0.8
3,878,327	-		CA264_16675	0.70	+0.8
3,878,327	-		CA264_16675	0.70	+0.8
3,878,385	+		CA264_16675	0.75	-0.5
3,878,388	+		CA264_16675	0.75	-0.5
3,878,389	-		CA264_16675	0.75	-1.8
3,878,392	+		CA264_16675	0.75	-0.7
3,878,392	+		CA264_16675	0.75	+0.1
3,878,450	-		CA264_16675	0.80	+2.1
3,878,450	-		CA264_16675	0.80	-0.2
3,878,528	+		CA264_16675	0.85	+1.1
3,878,529	-		CA264_16675	0.85	+0.1
3,878,546	+		CA264_16675	0.87	-1.5
3,878,546	+		CA264_16675	0.87	+2.1
3,878,553	+		CA264_16675	0.87	+1.7
3,878,575	+		CA264_16675	0.89	-0.3
3,878,628	+				+2.7
3,878,628	+				+1.3
3,878,629	-				+2.4
3,878,975	+				-0.1
3,878,976	-				+0.4
3,879,022	+				+1.5
3,879,084	-				-1.4
3,879,134	+		CA264_16680	0.12	+0.3
3,879,135	-		CA264_16680	0.12	+0.2
3,879,135	-		CA264_16680	0.12	-1.1
3,879,135	-		CA264_16680	0.12	-0.2
3,879,135	-		CA264_16680	0.12	+0.0
3,879,145	+		CA264_16680	0.13	+3.4
3,879,148	-		CA264_16680	0.13	+1.7
3,879,175	+		CA264_16680	0.15	-1.0
3,879,175	+		CA264_16680	0.15	+0.4
3,879,175	+		CA264_16680	0.15	-0.8
3,879,175	+		CA264_16680	0.15	+0.2
3,879,176	-		CA264_16680	0.15	+2.3
3,879,182	+		CA264_16680	0.16	+0.2
3,879,209	-		CA264_16680	0.18	-0.9
3,879,237	-		CA264_16680	0.21	-0.5
3,879,237	-		CA264_16680	0.21	-0.5
3,879,239	-		CA264_16680	0.21	+0.5
3,879,329	+		CA264_16680	0.29	+1.0
3,879,329	+		CA264_16680	0.29	+0.4
3,879,329	+		CA264_16680	0.29	+0.2
3,879,329	+		CA264_16680	0.29	-0.0
3,879,329	+		CA264_16680	0.29	+1.1
3,879,330	-		CA264_16680	0.29	-0.3
3,879,330	-		CA264_16680	0.29	+0.3
3,879,330	-		CA264_16680	0.29	-0.4
3,879,337	+		CA264_16680	0.30	-0.4
3,879,344	-		CA264_16680	0.30	+0.4
3,879,344	-		CA264_16680	0.30	-0.7
3,879,363	+		CA264_16680	0.32	-0.5
3,879,364	-		CA264_16680	0.32	+0.0
3,879,365	+		CA264_16680	0.32	+1.7
3,879,366	-		CA264_16680	0.32	+0.8
3,879,423	+		CA264_16680	0.37	-0.3
3,879,423	+		CA264_16680	0.37	+0.3
3,879,435	+		CA264_16680	0.38	+1.1
3,879,499	+		CA264_16680	0.44	-0.5
3,879,511	+		CA264_16680	0.45	+0.9
3,879,525	+		CA264_16680	0.46	-1.2
3,879,526	-		CA264_16680	0.46	-1.2
3,879,528	-		CA264_16680	0.46	-0.7
3,879,533	+		CA264_16680	0.47	+0.8
3,879,534	-		CA264_16680	0.47	+0.5
3,879,545	-		CA264_16680	0.48	+0.4
3,879,565	-		CA264_16680	0.49	+1.1
3,879,568	+		CA264_16680	0.50	+0.4
3,879,615	-		CA264_16680	0.54	-0.5
3,879,615	-		CA264_16680	0.54	+1.1