Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05485

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05480 and CA264_05485 are separated by 249 nucleotidesCA264_05485 and CA264_05490 are separated by 545 nucleotides CA264_05480: CA264_05480 - 3-ketoacyl-ACP reductase, at 1,272,379 to 1,273,098 _05480 CA264_05485: CA264_05485 - T9SS C-terminal target domain-containing protein, at 1,273,348 to 1,276,467 _05485 CA264_05490: CA264_05490 - hypothetical protein, at 1,277,013 to 1,277,885 _05490 Position (kb) 1273 1274 1275 1276 1277Strain fitness (log2 ratio) -2 -1 0 1 2at 1272.374 kb on + strandat 1272.376 kb on + strandat 1272.391 kb on - strandat 1272.632 kb on + strand, within CA264_05480at 1272.669 kb on + strand, within CA264_05480at 1272.670 kb on - strand, within CA264_05480at 1272.733 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.831 kb on + strand, within CA264_05480at 1272.898 kb on - strand, within CA264_05480at 1272.916 kb on + strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.946 kb on + strand, within CA264_05480at 1272.958 kb on + strand, within CA264_05480at 1272.998 kb on - strand, within CA264_05480at 1273.095 kb on + strandat 1273.286 kb on - strandat 1273.287 kb on + strandat 1273.289 kb on + strandat 1273.289 kb on + strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.292 kb on + strandat 1273.293 kb on - strandat 1273.325 kb on + strandat 1273.325 kb on + strandat 1273.325 kb on + strandat 1273.326 kb on - strandat 1273.329 kb on + strandat 1273.407 kb on - strandat 1273.407 kb on - strandat 1273.420 kb on + strandat 1273.456 kb on + strandat 1273.456 kb on + strandat 1273.456 kb on + strandat 1273.457 kb on - strandat 1273.463 kb on - strandat 1273.463 kb on - strandat 1273.471 kb on + strandat 1273.486 kb on + strandat 1273.486 kb on + strandat 1273.655 kb on - strandat 1273.661 kb on + strand, within CA264_05485at 1273.662 kb on - strand, within CA264_05485at 1273.716 kb on - strand, within CA264_05485at 1273.734 kb on + strand, within CA264_05485at 1273.740 kb on + strand, within CA264_05485at 1273.814 kb on - strand, within CA264_05485at 1273.814 kb on - strand, within CA264_05485at 1273.884 kb on + strand, within CA264_05485at 1273.885 kb on - strand, within CA264_05485at 1273.916 kb on + strand, within CA264_05485at 1273.923 kb on + strand, within CA264_05485at 1273.923 kb on + strand, within CA264_05485at 1273.924 kb on - strand, within CA264_05485at 1273.930 kb on - strand, within CA264_05485at 1273.930 kb on - strand, within CA264_05485at 1273.995 kb on + strand, within CA264_05485at 1274.066 kb on + strand, within CA264_05485at 1274.067 kb on - strand, within CA264_05485at 1274.067 kb on - strand, within CA264_05485at 1274.097 kb on + strand, within CA264_05485at 1274.111 kb on + strand, within CA264_05485at 1274.156 kb on + strand, within CA264_05485at 1274.156 kb on + strand, within CA264_05485at 1274.157 kb on - strand, within CA264_05485at 1274.157 kb on - strand, within CA264_05485at 1274.157 kb on - strand, within CA264_05485at 1274.254 kb on - strand, within CA264_05485at 1274.254 kb on - strand, within CA264_05485at 1274.307 kb on + strand, within CA264_05485at 1274.376 kb on - strand, within CA264_05485at 1274.429 kb on + strand, within CA264_05485at 1274.482 kb on + strand, within CA264_05485at 1274.483 kb on - strand, within CA264_05485at 1274.483 kb on - strand, within CA264_05485at 1274.565 kb on + strand, within CA264_05485at 1274.565 kb on + strand, within CA264_05485at 1274.567 kb on + strand, within CA264_05485at 1274.567 kb on + strand, within CA264_05485at 1274.567 kb on + strand, within CA264_05485at 1274.568 kb on - strand, within CA264_05485at 1274.568 kb on - strand, within CA264_05485at 1274.572 kb on + strand, within CA264_05485at 1274.598 kb on - strand, within CA264_05485at 1274.598 kb on - strand, within CA264_05485at 1274.659 kb on - strand, within CA264_05485at 1274.684 kb on + strand, within CA264_05485at 1274.774 kb on + strand, within CA264_05485at 1274.779 kb on + strand, within CA264_05485at 1274.789 kb on + strand, within CA264_05485at 1274.789 kb on + strand, within CA264_05485at 1274.790 kb on - strand, within CA264_05485at 1274.925 kb on - strand, within CA264_05485at 1274.925 kb on - strand, within CA264_05485at 1274.925 kb on - strand, within CA264_05485at 1274.973 kb on + strand, within CA264_05485at 1275.000 kb on + strand, within CA264_05485at 1275.036 kb on - strand, within CA264_05485at 1275.104 kb on + strand, within CA264_05485at 1275.105 kb on - strand, within CA264_05485at 1275.116 kb on + strand, within CA264_05485at 1275.117 kb on - strand, within CA264_05485at 1275.117 kb on - strand, within CA264_05485at 1275.205 kb on - strand, within CA264_05485at 1275.292 kb on + strand, within CA264_05485at 1275.292 kb on + strand, within CA264_05485at 1275.293 kb on - strand, within CA264_05485at 1275.343 kb on + strand, within CA264_05485at 1275.344 kb on - strand, within CA264_05485at 1275.390 kb on - strand, within CA264_05485at 1275.446 kb on + strand, within CA264_05485at 1275.477 kb on - strand, within CA264_05485at 1275.573 kb on - strand, within CA264_05485at 1275.573 kb on - strand, within CA264_05485at 1275.573 kb on - strand, within CA264_05485at 1275.606 kb on + strand, within CA264_05485at 1275.607 kb on - strand, within CA264_05485at 1275.626 kb on + strand, within CA264_05485at 1275.643 kb on - strand, within CA264_05485at 1275.649 kb on - strand, within CA264_05485at 1275.649 kb on - strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.650 kb on + strand, within CA264_05485at 1275.651 kb on - strand, within CA264_05485at 1275.651 kb on - strand, within CA264_05485at 1275.705 kb on - strand, within CA264_05485at 1275.705 kb on - strand, within CA264_05485at 1275.821 kb on + strand, within CA264_05485at 1275.828 kb on - strand, within CA264_05485at 1275.915 kb on - strand, within CA264_05485at 1275.915 kb on - strand, within CA264_05485at 1276.016 kb on + strand, within CA264_05485at 1276.016 kb on + strand, within CA264_05485at 1276.126 kb on + strand, within CA264_05485at 1276.126 kb on + strand, within CA264_05485at 1276.127 kb on - strand, within CA264_05485at 1276.127 kb on - strand, within CA264_05485at 1276.148 kb on - strand, within CA264_05485at 1276.163 kb on + strandat 1276.163 kb on + strandat 1276.270 kb on + strandat 1276.274 kb on + strandat 1276.383 kb on + strandat 1276.384 kb on - strandat 1276.479 kb on - strandat 1276.492 kb on + strandat 1276.581 kb on - strandat 1276.581 kb on - strandat 1276.581 kb on - strandat 1276.590 kb on + strandat 1276.590 kb on + strandat 1276.611 kb on + strandat 1276.611 kb on + strandat 1276.616 kb on + strandat 1276.634 kb on + strandat 1276.634 kb on + strandat 1276.780 kb on - strandat 1276.780 kb on - strandat 1276.780 kb on - strandat 1276.793 kb on - strandat 1276.856 kb on + strandat 1276.860 kb on + strandat 1276.860 kb on + strandat 1276.860 kb on + strandat 1276.860 kb on + strandat 1276.860 kb on + strandat 1276.861 kb on - strandat 1276.861 kb on - strandat 1276.861 kb on - strandat 1276.950 kb on + strandat 1276.951 kb on - strandat 1276.951 kb on - strandat 1276.951 kb on - strandat 1276.951 kb on - strandat 1276.998 kb on - strandat 1277.014 kb on + strandat 1277.081 kb on + strandat 1277.121 kb on + strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.161 kb on - strand, within CA264_05490at 1277.255 kb on - strand, within CA264_05490at 1277.321 kb on + strand, within CA264_05490at 1277.322 kb on - strand, within CA264_05490at 1277.328 kb on + strand, within CA264_05490at 1277.377 kb on + strand, within CA264_05490at 1277.377 kb on + strand, within CA264_05490at 1277.378 kb on - strand, within CA264_05490at 1277.464 kb on + strand, within CA264_05490at 1277.465 kb on - strand, within CA264_05490

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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1,272,374 + +0.3
1,272,376 + -0.2
1,272,391 - -0.4
1,272,632 + CA264_05480 0.35 -0.2
1,272,669 + CA264_05480 0.40 +0.1
1,272,670 - CA264_05480 0.40 +0.4
1,272,733 + CA264_05480 0.49 -0.0
1,272,737 + CA264_05480 0.50 -0.2
1,272,737 + CA264_05480 0.50 +0.6
1,272,738 - CA264_05480 0.50 +1.6
1,272,738 - CA264_05480 0.50 -1.6
1,272,738 - CA264_05480 0.50 +1.0
1,272,738 - CA264_05480 0.50 -0.1
1,272,740 + CA264_05480 0.50 +0.7
1,272,740 + CA264_05480 0.50 +0.4
1,272,740 + CA264_05480 0.50 +0.1
1,272,740 + CA264_05480 0.50 +0.2
1,272,831 + CA264_05480 0.63 +0.1
1,272,898 - CA264_05480 0.72 -0.6
1,272,916 + CA264_05480 0.75 +0.6
1,272,940 - CA264_05480 0.78 +1.9
1,272,940 - CA264_05480 0.78 +1.6
1,272,946 + CA264_05480 0.79 -1.9
1,272,958 + CA264_05480 0.80 +0.2
1,272,998 - CA264_05480 0.86 -0.2
1,273,095 + +0.2
1,273,286 - +2.0
1,273,287 + +0.4
1,273,289 + +1.0
1,273,289 + -0.0
1,273,290 - +0.8
1,273,290 - +1.3
1,273,290 - +0.5
1,273,292 + -0.2
1,273,293 - +0.6
1,273,325 + -1.3
1,273,325 + +0.7
1,273,325 + +0.9
1,273,326 - -0.1
1,273,329 + -0.7
1,273,407 - +2.0
1,273,407 - +1.0
1,273,420 + -0.6
1,273,456 + -0.3
1,273,456 + +1.6
1,273,456 + +2.3
1,273,457 - +0.2
1,273,463 - -0.6
1,273,463 - +0.7
1,273,471 + -1.5
1,273,486 + -0.0
1,273,486 + -0.4
1,273,655 - +0.3
1,273,661 + CA264_05485 0.10 -0.0
1,273,662 - CA264_05485 0.10 +0.7
1,273,716 - CA264_05485 0.12 -0.3
1,273,734 + CA264_05485 0.12 -0.3
1,273,740 + CA264_05485 0.13 -1.0
1,273,814 - CA264_05485 0.15 -0.6
1,273,814 - CA264_05485 0.15 -0.4
1,273,884 + CA264_05485 0.17 -0.2
1,273,885 - CA264_05485 0.17 +0.1
1,273,916 + CA264_05485 0.18 +0.1
1,273,923 + CA264_05485 0.18 +0.0
1,273,923 + CA264_05485 0.18 -0.4
1,273,924 - CA264_05485 0.18 -0.2
1,273,930 - CA264_05485 0.19 -0.5
1,273,930 - CA264_05485 0.19 +0.0
1,273,995 + CA264_05485 0.21 +1.1
1,274,066 + CA264_05485 0.23 +0.1
1,274,067 - CA264_05485 0.23 +1.5
1,274,067 - CA264_05485 0.23 +0.5
1,274,097 + CA264_05485 0.24 +1.0
1,274,111 + CA264_05485 0.24 +0.2
1,274,156 + CA264_05485 0.26 +0.2
1,274,156 + CA264_05485 0.26 +0.8
1,274,157 - CA264_05485 0.26 -0.8
1,274,157 - CA264_05485 0.26 +0.4
1,274,157 - CA264_05485 0.26 -0.4
1,274,254 - CA264_05485 0.29 +0.2
1,274,254 - CA264_05485 0.29 +2.0
1,274,307 + CA264_05485 0.31 +0.3
1,274,376 - CA264_05485 0.33 +0.4
1,274,429 + CA264_05485 0.35 +0.6
1,274,482 + CA264_05485 0.36 +0.1
1,274,483 - CA264_05485 0.36 -0.0
1,274,483 - CA264_05485 0.36 -0.3
1,274,565 + CA264_05485 0.39 -0.6
1,274,565 + CA264_05485 0.39 -0.1
1,274,567 + CA264_05485 0.39 -0.3
1,274,567 + CA264_05485 0.39 +0.1
1,274,567 + CA264_05485 0.39 +0.7
1,274,568 - CA264_05485 0.39 -0.6
1,274,568 - CA264_05485 0.39 -1.1
1,274,572 + CA264_05485 0.39 +0.6
1,274,598 - CA264_05485 0.40 -0.6
1,274,598 - CA264_05485 0.40 -0.0
1,274,659 - CA264_05485 0.42 +0.5
1,274,684 + CA264_05485 0.43 -1.6
1,274,774 + CA264_05485 0.46 -0.3
1,274,779 + CA264_05485 0.46 -1.2
1,274,789 + CA264_05485 0.46 +0.0
1,274,789 + CA264_05485 0.46 +0.2
1,274,790 - CA264_05485 0.46 +1.0
1,274,925 - CA264_05485 0.51 -1.0
1,274,925 - CA264_05485 0.51 -0.0
1,274,925 - CA264_05485 0.51 -0.0
1,274,973 + CA264_05485 0.52 -0.0
1,275,000 + CA264_05485 0.53 +0.4
1,275,036 - CA264_05485 0.54 +0.4
1,275,104 + CA264_05485 0.56 -0.2
1,275,105 - CA264_05485 0.56 -0.0
1,275,116 + CA264_05485 0.57 +1.8
1,275,117 - CA264_05485 0.57 +0.4
1,275,117 - CA264_05485 0.57 +0.5
1,275,205 - CA264_05485 0.60 -1.0
1,275,292 + CA264_05485 0.62 -0.6
1,275,292 + CA264_05485 0.62 +0.7
1,275,293 - CA264_05485 0.62 -0.0
1,275,343 + CA264_05485 0.64 +0.0
1,275,344 - CA264_05485 0.64 -0.5
1,275,390 - CA264_05485 0.65 +2.6
1,275,446 + CA264_05485 0.67 +0.3
1,275,477 - CA264_05485 0.68 +0.3
1,275,573 - CA264_05485 0.71 +0.1
1,275,573 - CA264_05485 0.71 +0.0
1,275,573 - CA264_05485 0.71 -0.0
1,275,606 + CA264_05485 0.72 -0.2
1,275,607 - CA264_05485 0.72 -0.4
1,275,626 + CA264_05485 0.73 -0.8
1,275,643 - CA264_05485 0.74 -0.6
1,275,649 - CA264_05485 0.74 +2.3
1,275,649 - CA264_05485 0.74 -0.7
1,275,650 + CA264_05485 0.74 -0.0
1,275,650 + CA264_05485 0.74 +0.5
1,275,650 + CA264_05485 0.74 +0.5
1,275,650 + CA264_05485 0.74 -0.7
1,275,650 + CA264_05485 0.74 +0.6
1,275,650 + CA264_05485 0.74 +0.1
1,275,651 - CA264_05485 0.74 -0.4
1,275,651 - CA264_05485 0.74 -0.5
1,275,705 - CA264_05485 0.76 +0.5
1,275,705 - CA264_05485 0.76 +0.0
1,275,821 + CA264_05485 0.79 -0.8
1,275,828 - CA264_05485 0.79 -0.2
1,275,915 - CA264_05485 0.82 +0.0
1,275,915 - CA264_05485 0.82 +0.4
1,276,016 + CA264_05485 0.86 -0.1
1,276,016 + CA264_05485 0.86 -0.7
1,276,126 + CA264_05485 0.89 +0.3
1,276,126 + CA264_05485 0.89 -0.6
1,276,127 - CA264_05485 0.89 +0.4
1,276,127 - CA264_05485 0.89 -0.4
1,276,148 - CA264_05485 0.90 -0.3
1,276,163 + -0.2
1,276,163 + -0.5
1,276,270 + +0.1
1,276,274 + +1.0
1,276,383 + -1.6
1,276,384 - -0.2
1,276,479 - +1.6
1,276,492 + -1.2
1,276,581 - +2.3
1,276,581 - +1.0
1,276,581 - +1.0
1,276,590 + +1.6
1,276,590 + -0.0
1,276,611 + +0.3
1,276,611 + -0.1
1,276,616 + +0.8
1,276,634 + -0.2
1,276,634 + -0.5
1,276,780 - -0.6
1,276,780 - -0.1
1,276,780 - +1.4
1,276,793 - -0.6
1,276,856 + +1.0
1,276,860 + +1.0
1,276,860 + +0.5
1,276,860 + +1.7
1,276,860 + -0.6
1,276,860 + -0.2
1,276,861 - -0.6
1,276,861 - +0.2
1,276,861 - -0.0
1,276,950 + -0.8
1,276,951 - -1.0
1,276,951 - +0.1
1,276,951 - +1.8
1,276,951 - +0.3
1,276,998 - +0.1
1,277,014 + +0.7
1,277,081 + -0.0
1,277,121 + CA264_05490 0.12 -0.4
1,277,161 - CA264_05490 0.17 +0.6
1,277,161 - CA264_05490 0.17 -0.4
1,277,161 - CA264_05490 0.17 -0.0
1,277,255 - CA264_05490 0.28 +0.2
1,277,321 + CA264_05490 0.35 -0.7
1,277,322 - CA264_05490 0.35 -0.5
1,277,328 + CA264_05490 0.36 -1.5
1,277,377 + CA264_05490 0.42 +0.3
1,277,377 + CA264_05490 0.42 -0.1
1,277,378 - CA264_05490 0.42 -0.4
1,277,464 + CA264_05490 0.52 -0.2
1,277,465 - CA264_05490 0.52 +0.3

Or see this region's nucleotide sequence