Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03420

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03415 and CA264_03420 are separated by 180 nucleotidesCA264_03420 and CA264_03425 are separated by 330 nucleotides CA264_03415: CA264_03415 - amidoligase, at 795,487 to 796,491 _03415 CA264_03420: CA264_03420 - gamma-glutamyltransferase, at 796,672 to 798,363 _03420 CA264_03425: CA264_03425 - glutathione-dependent formaldehyde dehydrogenase, at 798,694 to 799,848 _03425 Position (kb) 796 797 798 799Strain fitness (log2 ratio) -1 0 1 2 3at 795.770 kb on + strand, within CA264_03415at 795.770 kb on + strand, within CA264_03415at 795.812 kb on + strand, within CA264_03415at 795.821 kb on - strand, within CA264_03415at 795.821 kb on - strand, within CA264_03415at 795.822 kb on + strand, within CA264_03415at 795.823 kb on - strand, within CA264_03415at 795.846 kb on - strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.872 kb on + strand, within CA264_03415at 795.873 kb on - strand, within CA264_03415at 795.873 kb on - strand, within CA264_03415at 795.892 kb on + strand, within CA264_03415at 795.892 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.894 kb on + strand, within CA264_03415at 795.895 kb on - strand, within CA264_03415at 795.904 kb on + strand, within CA264_03415at 795.935 kb on + strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.936 kb on - strand, within CA264_03415at 795.975 kb on - strand, within CA264_03415at 796.076 kb on + strand, within CA264_03415at 796.076 kb on + strand, within CA264_03415at 796.235 kb on - strand, within CA264_03415at 796.298 kb on - strand, within CA264_03415at 796.298 kb on - strand, within CA264_03415at 796.302 kb on + strand, within CA264_03415at 796.302 kb on + strand, within CA264_03415at 796.303 kb on - strand, within CA264_03415at 796.402 kb on + strandat 796.402 kb on + strandat 796.403 kb on - strandat 796.449 kb on + strandat 796.450 kb on - strandat 796.464 kb on - strandat 796.468 kb on + strandat 796.491 kb on + strandat 796.491 kb on + strandat 796.491 kb on + strandat 796.492 kb on - strandat 796.536 kb on - strandat 796.536 kb on - strandat 796.536 kb on - strandat 796.623 kb on + strandat 796.623 kb on + strandat 796.624 kb on - strandat 796.624 kb on - strandat 796.624 kb on - strandat 796.626 kb on - strandat 796.646 kb on - strandat 796.646 kb on - strandat 796.646 kb on - strandat 796.646 kb on - strandat 796.697 kb on + strandat 796.701 kb on - strandat 796.701 kb on - strandat 796.701 kb on - strandat 796.712 kb on + strandat 796.712 kb on + strandat 796.914 kb on + strand, within CA264_03420at 796.997 kb on - strand, within CA264_03420at 797.079 kb on + strand, within CA264_03420at 797.517 kb on - strand, within CA264_03420at 797.542 kb on + strand, within CA264_03420at 797.615 kb on - strand, within CA264_03420at 797.694 kb on + strand, within CA264_03420at 797.694 kb on + strand, within CA264_03420at 797.695 kb on - strand, within CA264_03420at 797.794 kb on + strand, within CA264_03420at 797.794 kb on + strand, within CA264_03420at 797.795 kb on - strand, within CA264_03420at 797.845 kb on - strand, within CA264_03420at 797.945 kb on - strand, within CA264_03420at 797.996 kb on + strand, within CA264_03420at 797.996 kb on + strand, within CA264_03420at 797.997 kb on - strand, within CA264_03420at 798.012 kb on + strand, within CA264_03420at 798.012 kb on + strand, within CA264_03420at 798.013 kb on - strand, within CA264_03420at 798.013 kb on - strand, within CA264_03420at 798.040 kb on + strand, within CA264_03420at 798.041 kb on - strand, within CA264_03420at 798.041 kb on - strand, within CA264_03420at 798.048 kb on - strand, within CA264_03420at 798.048 kb on - strand, within CA264_03420at 798.048 kb on - strand, within CA264_03420at 798.048 kb on - strand, within CA264_03420at 798.050 kb on + strand, within CA264_03420at 798.051 kb on - strand, within CA264_03420at 798.075 kb on + strand, within CA264_03420at 798.204 kb on - strandat 798.204 kb on - strandat 798.252 kb on - strandat 798.255 kb on + strandat 798.255 kb on + strandat 798.256 kb on - strandat 798.384 kb on + strandat 798.400 kb on - strandat 798.432 kb on + strandat 798.433 kb on - strandat 798.448 kb on + strandat 798.449 kb on - strandat 798.459 kb on - strandat 798.514 kb on + strandat 798.526 kb on - strandat 798.584 kb on + strandat 798.591 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.594 kb on + strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.595 kb on - strandat 798.624 kb on - strandat 798.662 kb on + strandat 798.694 kb on - strandat 798.694 kb on - strandat 798.747 kb on + strandat 798.747 kb on + strandat 798.802 kb on - strandat 798.802 kb on - strandat 798.826 kb on + strand, within CA264_03425at 798.827 kb on - strand, within CA264_03425at 798.827 kb on - strand, within CA264_03425at 798.890 kb on + strand, within CA264_03425at 798.944 kb on + strand, within CA264_03425at 798.951 kb on + strand, within CA264_03425at 798.972 kb on + strand, within CA264_03425at 798.973 kb on - strand, within CA264_03425at 798.995 kb on - strand, within CA264_03425at 799.052 kb on - strand, within CA264_03425at 799.052 kb on - strand, within CA264_03425at 799.061 kb on + strand, within CA264_03425at 799.075 kb on - strand, within CA264_03425at 799.093 kb on + strand, within CA264_03425at 799.108 kb on + strand, within CA264_03425at 799.164 kb on - strand, within CA264_03425at 799.217 kb on + strand, within CA264_03425at 799.217 kb on + strand, within CA264_03425at 799.218 kb on - strand, within CA264_03425at 799.218 kb on - strand, within CA264_03425at 799.218 kb on - strand, within CA264_03425at 799.242 kb on - strand, within CA264_03425at 799.264 kb on - strand, within CA264_03425

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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795,770 + CA264_03415 0.28 +0.8
795,770 + CA264_03415 0.28 -0.1
795,812 + CA264_03415 0.32 -0.5
795,821 - CA264_03415 0.33 +0.1
795,821 - CA264_03415 0.33 +1.0
795,822 + CA264_03415 0.33 +0.2
795,823 - CA264_03415 0.33 +0.4
795,846 - CA264_03415 0.36 +0.0
795,872 + CA264_03415 0.38 +0.1
795,872 + CA264_03415 0.38 +0.0
795,872 + CA264_03415 0.38 -0.3
795,873 - CA264_03415 0.38 -0.4
795,873 - CA264_03415 0.38 +0.3
795,892 + CA264_03415 0.40 -0.9
795,892 + CA264_03415 0.40 +0.1
795,894 + CA264_03415 0.40 -0.1
795,894 + CA264_03415 0.40 -0.0
795,894 + CA264_03415 0.40 +1.0
795,895 - CA264_03415 0.41 -0.0
795,904 + CA264_03415 0.41 +1.4
795,935 + CA264_03415 0.45 +0.7
795,936 - CA264_03415 0.45 -0.9
795,936 - CA264_03415 0.45 +1.0
795,936 - CA264_03415 0.45 +0.4
795,936 - CA264_03415 0.45 -1.1
795,975 - CA264_03415 0.49 -0.4
796,076 + CA264_03415 0.59 -0.0
796,076 + CA264_03415 0.59 -0.3
796,235 - CA264_03415 0.74 +0.5
796,298 - CA264_03415 0.81 +0.6
796,298 - CA264_03415 0.81 +2.0
796,302 + CA264_03415 0.81 -1.0
796,302 + CA264_03415 0.81 +0.1
796,303 - CA264_03415 0.81 -0.0
796,402 + +1.4
796,402 + -0.2
796,403 - +0.2
796,449 + +1.0
796,450 - -0.9
796,464 - +1.0
796,468 + +1.0
796,491 + +0.1
796,491 + +0.1
796,491 + +0.4
796,492 - +0.8
796,536 - -0.8
796,536 - -0.0
796,536 - -0.9
796,623 + -0.8
796,623 + +0.7
796,624 - -0.1
796,624 - +1.0
796,624 - -0.2
796,626 - -0.7
796,646 - -0.1
796,646 - +0.4
796,646 - -0.7
796,646 - +1.1
796,697 + -0.6
796,701 - -0.1
796,701 - -1.0
796,701 - -0.2
796,712 + -0.6
796,712 + -0.0
796,914 + CA264_03420 0.14 -0.5
796,997 - CA264_03420 0.19 +0.3
797,079 + CA264_03420 0.24 +1.0
797,517 - CA264_03420 0.50 -0.3
797,542 + CA264_03420 0.51 +0.4
797,615 - CA264_03420 0.56 -0.4
797,694 + CA264_03420 0.60 +0.7
797,694 + CA264_03420 0.60 -0.1
797,695 - CA264_03420 0.60 +2.4
797,794 + CA264_03420 0.66 -0.1
797,794 + CA264_03420 0.66 -0.3
797,795 - CA264_03420 0.66 -0.0
797,845 - CA264_03420 0.69 -0.0
797,945 - CA264_03420 0.75 -0.0
797,996 + CA264_03420 0.78 +0.2
797,996 + CA264_03420 0.78 -1.0
797,997 - CA264_03420 0.78 +0.7
798,012 + CA264_03420 0.79 +0.4
798,012 + CA264_03420 0.79 +0.4
798,013 - CA264_03420 0.79 -1.4
798,013 - CA264_03420 0.79 -1.4
798,040 + CA264_03420 0.81 +1.2
798,041 - CA264_03420 0.81 -0.7
798,041 - CA264_03420 0.81 +0.3
798,048 - CA264_03420 0.81 -0.4
798,048 - CA264_03420 0.81 +0.5
798,048 - CA264_03420 0.81 -0.6
798,048 - CA264_03420 0.81 +1.8
798,050 + CA264_03420 0.81 +0.4
798,051 - CA264_03420 0.82 -0.4
798,075 + CA264_03420 0.83 +0.2
798,204 - -0.1
798,204 - +0.1
798,252 - -0.0
798,255 + +2.0
798,255 + +0.2
798,256 - -0.1
798,384 + -0.4
798,400 - -0.5
798,432 + +0.1
798,433 - -0.3
798,448 + -0.8
798,449 - -0.3
798,459 - -0.2
798,514 + +0.9
798,526 - +0.5
798,584 + -0.6
798,591 + +0.4
798,594 + -0.5
798,594 + -0.2
798,594 + +0.8
798,594 + +1.3
798,594 + -0.2
798,594 + -0.0
798,594 + +0.0
798,594 + +0.6
798,594 + -0.7
798,594 + -0.0
798,595 - -0.1
798,595 - -1.2
798,595 - +0.0
798,595 - -0.1
798,595 - +0.0
798,595 - -0.1
798,595 - -0.1
798,624 - +0.3
798,662 + +0.2
798,694 - -0.1
798,694 - +1.2
798,747 + +3.3
798,747 + +0.4
798,802 - -0.6
798,802 - -0.4
798,826 + CA264_03425 0.11 -0.4
798,827 - CA264_03425 0.12 -0.7
798,827 - CA264_03425 0.12 +0.2
798,890 + CA264_03425 0.17 -0.6
798,944 + CA264_03425 0.22 +0.0
798,951 + CA264_03425 0.22 -0.3
798,972 + CA264_03425 0.24 +1.1
798,973 - CA264_03425 0.24 -0.4
798,995 - CA264_03425 0.26 +0.1
799,052 - CA264_03425 0.31 -1.0
799,052 - CA264_03425 0.31 -0.1
799,061 + CA264_03425 0.32 -0.3
799,075 - CA264_03425 0.33 +0.1
799,093 + CA264_03425 0.35 -0.4
799,108 + CA264_03425 0.36 +0.3
799,164 - CA264_03425 0.41 +1.0
799,217 + CA264_03425 0.45 -0.5
799,217 + CA264_03425 0.45 -0.4
799,218 - CA264_03425 0.45 -0.2
799,218 - CA264_03425 0.45 +2.5
799,218 - CA264_03425 0.45 -0.5
799,242 - CA264_03425 0.47 +0.3
799,264 - CA264_03425 0.49 -0.4

Or see this region's nucleotide sequence