Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03385 and CA264_03390 are separated by 247 nucleotides CA264_03390 and CA264_03395 are separated by 122 nucleotides CA264_03395 and CA264_03400 are separated by 237 nucleotides CA264_03400 and CA264_03405 overlap by 4 nucleotides
CA264_03385: CA264_03385 - hypothetical protein, at 791,454 to 791,675
_03385
CA264_03390: CA264_03390 - hypothetical protein, at 791,923 to 792,291
_03390
CA264_03395: CA264_03395 - phospholipase, at 792,414 to 793,115
_03395
CA264_03400: CA264_03400 - hypothetical protein, at 793,353 to 793,886
_03400
CA264_03405: CA264_03405 - hypothetical protein, at 793,883 to 794,497
_03405
Position (kb) 792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 791.439 kb on + strand at 791.439 kb on + strand at 791.444 kb on + strand at 791.613 kb on + strand, within CA264_03385 at 791.614 kb on - strand, within CA264_03385 at 791.618 kb on + strand, within CA264_03385 at 791.619 kb on - strand, within CA264_03385 at 791.675 kb on + strand at 791.691 kb on + strand at 791.714 kb on + strand at 791.714 kb on + strand at 791.715 kb on - strand at 791.813 kb on + strand at 791.858 kb on + strand at 791.859 kb on - strand at 791.869 kb on + strand at 791.875 kb on + strand at 791.876 kb on - strand at 791.922 kb on + strand at 791.965 kb on - strand, within CA264_03390 at 792.031 kb on - strand, within CA264_03390 at 792.203 kb on - strand, within CA264_03390 at 792.287 kb on - strand at 792.290 kb on - strand at 792.298 kb on + strand at 792.298 kb on + strand at 792.301 kb on - strand at 792.378 kb on + strand at 792.382 kb on + strand at 792.383 kb on - strand at 792.383 kb on - strand at 792.435 kb on + strand at 792.436 kb on - strand at 792.436 kb on - strand at 792.436 kb on - strand at 792.544 kb on - strand, within CA264_03395 at 792.693 kb on + strand, within CA264_03395 at 792.707 kb on + strand, within CA264_03395 at 792.707 kb on + strand, within CA264_03395 at 792.742 kb on - strand, within CA264_03395 at 792.742 kb on - strand, within CA264_03395 at 792.777 kb on + strand, within CA264_03395 at 792.832 kb on - strand, within CA264_03395 at 792.869 kb on + strand, within CA264_03395 at 792.869 kb on + strand, within CA264_03395 at 792.903 kb on + strand, within CA264_03395 at 792.904 kb on - strand, within CA264_03395 at 792.939 kb on - strand, within CA264_03395 at 792.983 kb on + strand, within CA264_03395 at 793.028 kb on - strand, within CA264_03395 at 793.028 kb on - strand, within CA264_03395 at 793.032 kb on + strand, within CA264_03395 at 793.032 kb on + strand, within CA264_03395 at 793.033 kb on - strand, within CA264_03395 at 793.035 kb on - strand, within CA264_03395 at 793.079 kb on + strand at 793.113 kb on + strand at 793.194 kb on + strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.195 kb on - strand at 793.196 kb on + strand at 793.196 kb on + strand at 793.197 kb on - strand at 793.197 kb on - strand at 793.292 kb on + strand at 793.352 kb on + strand at 793.365 kb on - strand at 793.389 kb on + strand at 793.390 kb on - strand at 793.397 kb on - strand at 793.397 kb on - strand at 793.440 kb on + strand, within CA264_03400 at 793.450 kb on - strand, within CA264_03400 at 793.483 kb on + strand, within CA264_03400 at 793.487 kb on - strand, within CA264_03400 at 793.557 kb on + strand, within CA264_03400 at 793.557 kb on + strand, within CA264_03400 at 793.558 kb on - strand, within CA264_03400 at 793.558 kb on - strand, within CA264_03400 at 793.563 kb on + strand, within CA264_03400 at 793.668 kb on - strand, within CA264_03400 at 793.844 kb on - strand at 793.892 kb on - strand at 793.903 kb on + strand at 793.904 kb on - strand at 793.906 kb on - strand at 793.929 kb on - strand at 793.968 kb on + strand, within CA264_03405
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 791,439 + +0.7 791,439 + +0.5 791,444 + +0.1 791,613 + CA264_03385 0.72 +0.2 791,614 - CA264_03385 0.72 +0.1 791,618 + CA264_03385 0.74 +3.5 791,619 - CA264_03385 0.74 +0.3 791,675 + +2.4 791,691 + +0.8 791,714 + +0.6 791,714 + +1.0 791,715 - +0.6 791,813 + +0.5 791,858 + +1.5 791,859 - +0.0 791,869 + +0.4 791,875 + +0.6 791,876 - +0.1 791,922 + +0.6 791,965 - CA264_03390 0.11 +0.2 792,031 - CA264_03390 0.29 -0.4 792,203 - CA264_03390 0.76 +0.5 792,287 - -0.0 792,290 - +2.0 792,298 + +0.6 792,298 + +1.8 792,301 - +0.5 792,378 + +1.0 792,382 + +1.5 792,383 - +0.5 792,383 - +1.0 792,435 + +1.1 792,436 - -0.0 792,436 - -0.3 792,436 - +0.3 792,544 - CA264_03395 0.19 +0.1 792,693 + CA264_03395 0.40 +1.7 792,707 + CA264_03395 0.42 +1.0 792,707 + CA264_03395 0.42 +1.3 792,742 - CA264_03395 0.47 +1.8 792,742 - CA264_03395 0.47 +2.3 792,777 + CA264_03395 0.52 +1.5 792,832 - CA264_03395 0.60 +2.0 792,869 + CA264_03395 0.65 +0.9 792,869 + CA264_03395 0.65 +1.1 792,903 + CA264_03395 0.70 +1.9 792,904 - CA264_03395 0.70 +1.1 792,939 - CA264_03395 0.75 +1.4 792,983 + CA264_03395 0.81 +2.3 793,028 - CA264_03395 0.87 +0.2 793,028 - CA264_03395 0.87 +1.3 793,032 + CA264_03395 0.88 +1.7 793,032 + CA264_03395 0.88 +2.3 793,033 - CA264_03395 0.88 -0.4 793,035 - CA264_03395 0.88 +0.8 793,079 + +2.1 793,113 + +1.2 793,194 + +2.3 793,195 - +0.9 793,195 - +0.9 793,195 - +2.0 793,195 - +0.8 793,196 + +1.4 793,196 + +1.5 793,197 - +0.5 793,197 - +2.2 793,292 + -0.3 793,352 + +0.2 793,365 - -0.2 793,389 + -0.4 793,390 - -0.0 793,397 - -0.5 793,397 - -1.4 793,440 + CA264_03400 0.16 +0.2 793,450 - CA264_03400 0.18 +0.1 793,483 + CA264_03400 0.24 -1.0 793,487 - CA264_03400 0.25 -2.1 793,557 + CA264_03400 0.38 -0.7 793,557 + CA264_03400 0.38 -0.4 793,558 - CA264_03400 0.38 -1.2 793,558 - CA264_03400 0.38 +0.4 793,563 + CA264_03400 0.39 -0.4 793,668 - CA264_03400 0.59 -1.2 793,844 - -0.8 793,892 - -0.4 793,903 + -1.4 793,904 - +0.1 793,906 - -1.1 793,929 - -1.0 793,968 + CA264_03405 0.14 +1.0
Or see this region's nucleotide sequence