Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02580 and CA264_02585 are separated by 7 nucleotides CA264_02585 and CA264_02590 are separated by 219 nucleotides CA264_02590 and CA264_02595 are separated by 195 nucleotides
CA264_02580: CA264_02580 - transcriptional regulator, at 600,670 to 600,978
_02580
CA264_02585: CA264_02585 - hypothetical protein, at 600,986 to 601,609
_02585
CA264_02590: CA264_02590 - ribosomal subunit interface protein, at 601,829 to 602,134
_02590
CA264_02595: CA264_02595 - oxidoreductase, at 602,330 to 603,112
_02595
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.951 kb on + strand at 600.955 kb on + strand at 600.955 kb on + strand at 600.956 kb on - strand at 600.956 kb on - strand at 600.957 kb on + strand at 600.964 kb on + strand at 600.964 kb on + strand at 600.964 kb on + strand at 600.965 kb on - strand at 600.980 kb on + strand at 601.005 kb on + strand at 601.007 kb on + strand at 601.008 kb on - strand at 601.020 kb on + strand at 601.020 kb on + strand at 601.025 kb on + strand at 601.025 kb on + strand at 601.025 kb on + strand at 601.026 kb on - strand at 601.081 kb on - strand, within CA264_02585 at 601.157 kb on - strand, within CA264_02585 at 601.196 kb on + strand, within CA264_02585 at 601.226 kb on + strand, within CA264_02585 at 601.271 kb on + strand, within CA264_02585 at 601.440 kb on + strand, within CA264_02585 at 601.440 kb on + strand, within CA264_02585 at 601.441 kb on - strand, within CA264_02585 at 601.445 kb on + strand, within CA264_02585 at 601.446 kb on - strand, within CA264_02585 at 601.446 kb on - strand, within CA264_02585 at 601.487 kb on + strand, within CA264_02585 at 601.559 kb on - strand at 601.559 kb on - strand at 601.647 kb on - strand at 601.667 kb on + strand at 601.668 kb on - strand at 601.668 kb on - strand at 601.669 kb on + strand at 601.669 kb on + strand at 601.669 kb on + strand at 601.674 kb on + strand at 601.680 kb on - strand at 601.759 kb on + strand at 601.815 kb on + strand at 601.835 kb on + strand at 601.836 kb on - strand at 601.836 kb on - strand at 601.837 kb on + strand at 601.857 kb on + strand at 601.869 kb on + strand, within CA264_02590 at 601.870 kb on - strand, within CA264_02590 at 601.885 kb on - strand, within CA264_02590 at 601.903 kb on - strand, within CA264_02590 at 601.903 kb on - strand, within CA264_02590 at 602.000 kb on - strand, within CA264_02590 at 602.049 kb on + strand, within CA264_02590 at 602.050 kb on - strand, within CA264_02590 at 602.078 kb on + strand, within CA264_02590 at 602.079 kb on - strand, within CA264_02590 at 602.177 kb on + strand at 602.177 kb on + strand at 602.178 kb on - strand at 602.180 kb on - strand at 602.187 kb on + strand at 602.187 kb on + strand at 602.285 kb on + strand at 602.286 kb on - strand at 602.287 kb on + strand at 602.287 kb on + strand at 602.287 kb on + strand at 602.287 kb on + strand at 602.291 kb on + strand at 602.292 kb on - strand at 602.292 kb on - strand at 602.299 kb on + strand at 602.300 kb on - strand at 602.300 kb on - strand at 602.300 kb on - strand at 602.302 kb on - strand at 602.316 kb on + strand at 602.317 kb on - strand at 602.342 kb on + strand at 602.388 kb on + strand at 602.388 kb on + strand at 602.398 kb on + strand at 602.435 kb on - strand, within CA264_02595 at 602.505 kb on + strand, within CA264_02595 at 602.506 kb on - strand, within CA264_02595 at 602.526 kb on + strand, within CA264_02595 at 603.052 kb on + strand at 603.106 kb on + strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 600,951 + -1.8 600,955 + +0.7 600,955 + -0.6 600,956 - -0.4 600,956 - +0.8 600,957 + -0.6 600,964 + -0.6 600,964 + +1.0 600,964 + +0.3 600,965 - -0.0 600,980 + +0.6 601,005 + -1.8 601,007 + +1.0 601,008 - -0.2 601,020 + -1.3 601,020 + -0.7 601,025 + +0.1 601,025 + -0.6 601,025 + -1.0 601,026 - -0.6 601,081 - CA264_02585 0.15 -0.3 601,157 - CA264_02585 0.27 -0.2 601,196 + CA264_02585 0.34 -0.4 601,226 + CA264_02585 0.38 +0.3 601,271 + CA264_02585 0.46 +0.1 601,440 + CA264_02585 0.73 -0.8 601,440 + CA264_02585 0.73 -0.5 601,441 - CA264_02585 0.73 -0.4 601,445 + CA264_02585 0.74 +0.1 601,446 - CA264_02585 0.74 -0.3 601,446 - CA264_02585 0.74 +1.6 601,487 + CA264_02585 0.80 -0.8 601,559 - +0.2 601,559 - +0.0 601,647 - +0.4 601,667 + +0.6 601,668 - -0.2 601,668 - +0.8 601,669 + -0.6 601,669 + -0.3 601,669 + +0.4 601,674 + -0.6 601,680 - -0.1 601,759 + -0.0 601,815 + +0.1 601,835 + +0.1 601,836 - -0.2 601,836 - -0.0 601,837 + +0.5 601,857 + -0.9 601,869 + CA264_02590 0.13 +0.7 601,870 - CA264_02590 0.13 -1.0 601,885 - CA264_02590 0.18 -0.2 601,903 - CA264_02590 0.24 -0.0 601,903 - CA264_02590 0.24 -0.2 602,000 - CA264_02590 0.56 +0.9 602,049 + CA264_02590 0.72 +0.8 602,050 - CA264_02590 0.72 +0.2 602,078 + CA264_02590 0.81 +0.0 602,079 - CA264_02590 0.82 -0.2 602,177 + +0.1 602,177 + -0.3 602,178 - -1.7 602,180 - -0.0 602,187 + -0.5 602,187 + -0.5 602,285 + -0.1 602,286 - -0.0 602,287 + +0.2 602,287 + -3.1 602,287 + +0.2 602,287 + -0.1 602,291 + +1.4 602,292 - -0.6 602,292 - -0.4 602,299 + -1.0 602,300 - -0.0 602,300 - -0.3 602,300 - -0.3 602,302 - -0.2 602,316 + -0.1 602,317 - +0.4 602,342 + -0.0 602,388 + +0.1 602,388 + +0.2 602,398 + +1.3 602,435 - CA264_02595 0.13 -2.6 602,505 + CA264_02595 0.22 -1.8 602,506 - CA264_02595 0.22 -0.2 602,526 + CA264_02595 0.25 +0.4 603,052 + +0.2 603,106 + +0.7 603,117 - +1.0 603,117 - +0.2 603,131 - +0.3
Or see this region's nucleotide sequence