Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02355 and CA264_02360 are separated by 179 nucleotides CA264_02360 and CA264_02365 overlap by 8 nucleotides
CA264_02355: CA264_02355 - hypothetical protein, at 544,057 to 545,112
_02355
CA264_02360: CA264_02360 - exodeoxyribonuclease VII small subunit, at 545,292 to 545,555
_02360
CA264_02365: CA264_02365 - exodeoxyribonuclease VII large subunit, at 545,548 to 547,107
_02365
Position (kb) 545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 544.621 kb on - strand, within CA264_02355 at 544.624 kb on + strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.625 kb on - strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.699 kb on + strand, within CA264_02355 at 544.702 kb on + strand, within CA264_02355 at 544.703 kb on - strand, within CA264_02355 at 544.712 kb on - strand, within CA264_02355 at 544.766 kb on - strand, within CA264_02355 at 544.766 kb on - strand, within CA264_02355 at 544.779 kb on + strand, within CA264_02355 at 544.780 kb on - strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.783 kb on + strand, within CA264_02355 at 544.784 kb on - strand, within CA264_02355 at 545.036 kb on - strand at 545.038 kb on + strand at 545.038 kb on + strand at 545.039 kb on - strand at 545.039 kb on - strand at 545.073 kb on + strand at 545.110 kb on + strand at 545.124 kb on - strand at 545.128 kb on + strand at 545.129 kb on - strand at 545.146 kb on - strand at 545.159 kb on + strand at 545.159 kb on + strand at 545.210 kb on - strand at 545.210 kb on - strand at 545.211 kb on + strand at 545.318 kb on + strand at 545.318 kb on + strand at 545.319 kb on - strand, within CA264_02360 at 545.469 kb on + strand, within CA264_02360 at 545.505 kb on + strand, within CA264_02360 at 545.506 kb on - strand, within CA264_02360 at 545.527 kb on + strand, within CA264_02360 at 545.541 kb on + strand at 545.542 kb on - strand at 545.560 kb on - strand at 545.569 kb on + strand at 545.641 kb on - strand at 545.647 kb on - strand at 545.679 kb on - strand at 545.787 kb on + strand, within CA264_02365 at 545.823 kb on + strand, within CA264_02365 at 546.365 kb on + strand, within CA264_02365 at 546.502 kb on - strand, within CA264_02365 at 546.527 kb on + strand, within CA264_02365 at 546.530 kb on + strand, within CA264_02365 at 546.537 kb on - strand, within CA264_02365
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 544,621 - CA264_02355 0.53 +1.0 544,624 + CA264_02355 0.54 -0.7 544,625 - CA264_02355 0.54 -1.8 544,625 - CA264_02355 0.54 -0.4 544,625 - CA264_02355 0.54 +0.1 544,699 + CA264_02355 0.61 -0.4 544,699 + CA264_02355 0.61 +1.1 544,699 + CA264_02355 0.61 -0.5 544,699 + CA264_02355 0.61 -0.8 544,702 + CA264_02355 0.61 -0.3 544,703 - CA264_02355 0.61 -0.1 544,712 - CA264_02355 0.62 -0.7 544,766 - CA264_02355 0.67 -0.4 544,766 - CA264_02355 0.67 -0.3 544,779 + CA264_02355 0.68 -0.6 544,780 - CA264_02355 0.68 -0.2 544,783 + CA264_02355 0.69 -0.7 544,783 + CA264_02355 0.69 +0.6 544,783 + CA264_02355 0.69 -0.1 544,784 - CA264_02355 0.69 +0.8 545,036 - -0.1 545,038 + -0.3 545,038 + +0.6 545,039 - +0.5 545,039 - -0.5 545,073 + +0.4 545,110 + +0.2 545,124 - +0.0 545,128 + -2.0 545,129 - -1.0 545,146 - +0.3 545,159 + -0.0 545,159 + -0.7 545,210 - -0.4 545,210 - +1.2 545,211 + -0.8 545,318 + -1.0 545,318 + -0.4 545,319 - CA264_02360 0.10 +0.3 545,469 + CA264_02360 0.67 -0.4 545,505 + CA264_02360 0.81 +0.4 545,506 - CA264_02360 0.81 +0.2 545,527 + CA264_02360 0.89 -0.2 545,541 + +0.8 545,542 - +0.2 545,560 - +1.5 545,569 + -0.6 545,641 - +1.6 545,647 - -0.6 545,679 - +1.2 545,787 + CA264_02365 0.15 -0.5 545,823 + CA264_02365 0.18 +1.0 546,365 + CA264_02365 0.52 -0.8 546,502 - CA264_02365 0.61 +0.3 546,527 + CA264_02365 0.63 -0.2 546,530 + CA264_02365 0.63 -0.5 546,537 - CA264_02365 0.63 +1.0
Or see this region's nucleotide sequence