Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02350

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02340 and CA264_02345 are separated by 165 nucleotidesCA264_02345 and CA264_02350 are separated by 25 nucleotidesCA264_02350 and CA264_02355 are separated by 148 nucleotides CA264_02340: CA264_02340 - hypothetical protein, at 540,458 to 541,957 _02340 CA264_02345: CA264_02345 - restriction endonuclease, at 542,123 to 542,416 _02345 CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908 _02350 CA264_02355: CA264_02355 - hypothetical protein, at 544,057 to 545,112 _02355 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 541.553 kb on - strand, within CA264_02340at 541.555 kb on - strand, within CA264_02340at 541.571 kb on + strand, within CA264_02340at 541.571 kb on + strand, within CA264_02340at 541.572 kb on - strand, within CA264_02340at 541.572 kb on - strand, within CA264_02340at 541.573 kb on + strand, within CA264_02340at 541.695 kb on - strand, within CA264_02340at 541.814 kb on + strandat 541.846 kb on - strandat 541.874 kb on + strandat 541.875 kb on - strandat 541.883 kb on + strandat 541.884 kb on - strandat 542.030 kb on - strandat 542.030 kb on - strandat 542.030 kb on - strandat 542.035 kb on - strandat 542.092 kb on + strandat 542.095 kb on + strandat 542.096 kb on - strandat 542.096 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.098 kb on - strandat 542.119 kb on - strandat 542.127 kb on + strandat 542.149 kb on - strandat 542.149 kb on - strandat 542.149 kb on - strandat 542.151 kb on + strandat 542.151 kb on + strandat 542.281 kb on + strand, within CA264_02345at 542.282 kb on - strand, within CA264_02345at 542.306 kb on + strand, within CA264_02345at 542.311 kb on + strand, within CA264_02345at 542.312 kb on - strand, within CA264_02345at 542.312 kb on - strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.314 kb on + strand, within CA264_02345at 542.414 kb on + strandat 542.489 kb on - strandat 542.522 kb on - strandat 542.535 kb on + strandat 542.547 kb on + strandat 542.548 kb on - strandat 542.569 kb on - strandat 542.583 kb on - strandat 542.584 kb on + strandat 542.584 kb on + strandat 542.585 kb on - strandat 542.585 kb on - strandat 542.585 kb on - strandat 542.594 kb on + strand, within CA264_02350at 542.594 kb on + strand, within CA264_02350at 542.616 kb on - strand, within CA264_02350at 542.617 kb on + strand, within CA264_02350at 542.617 kb on + strand, within CA264_02350at 542.618 kb on - strand, within CA264_02350at 542.622 kb on - strand, within CA264_02350at 542.660 kb on + strand, within CA264_02350at 542.751 kb on - strand, within CA264_02350at 542.752 kb on + strand, within CA264_02350at 542.753 kb on - strand, within CA264_02350at 542.786 kb on - strand, within CA264_02350at 542.852 kb on + strand, within CA264_02350at 542.853 kb on - strand, within CA264_02350at 542.853 kb on - strand, within CA264_02350at 542.854 kb on + strand, within CA264_02350at 542.891 kb on - strand, within CA264_02350at 543.077 kb on - strand, within CA264_02350at 543.190 kb on - strand, within CA264_02350at 543.204 kb on - strand, within CA264_02350at 543.352 kb on + strand, within CA264_02350at 543.422 kb on + strand, within CA264_02350at 543.422 kb on + strand, within CA264_02350at 543.423 kb on - strand, within CA264_02350at 543.622 kb on + strand, within CA264_02350at 543.721 kb on + strand, within CA264_02350at 543.757 kb on + strand, within CA264_02350at 543.758 kb on - strand, within CA264_02350at 543.788 kb on - strandat 543.788 kb on - strandat 543.788 kb on - strandat 543.890 kb on - strandat 543.892 kb on - strandat 543.915 kb on + strandat 543.915 kb on + strandat 543.916 kb on - strandat 543.916 kb on - strandat 543.916 kb on - strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.949 kb on - strandat 543.949 kb on - strandat 543.949 kb on - strandat 543.950 kb on + strandat 543.950 kb on + strandat 543.951 kb on - strandat 544.039 kb on + strandat 544.039 kb on + strandat 544.039 kb on + strandat 544.040 kb on - strandat 544.040 kb on - strandat 544.074 kb on + strandat 544.098 kb on + strandat 544.098 kb on + strandat 544.099 kb on - strandat 544.257 kb on + strand, within CA264_02355at 544.277 kb on + strand, within CA264_02355at 544.278 kb on - strand, within CA264_02355at 544.621 kb on - strand, within CA264_02355at 544.624 kb on + strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.702 kb on + strand, within CA264_02355at 544.703 kb on - strand, within CA264_02355at 544.712 kb on - strand, within CA264_02355at 544.766 kb on - strand, within CA264_02355at 544.766 kb on - strand, within CA264_02355at 544.779 kb on + strand, within CA264_02355at 544.780 kb on - strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.784 kb on - strand, within CA264_02355

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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541,553 - CA264_02340 0.73 +0.1
541,555 - CA264_02340 0.73 +0.4
541,571 + CA264_02340 0.74 +0.8
541,571 + CA264_02340 0.74 +1.9
541,572 - CA264_02340 0.74 -0.2
541,572 - CA264_02340 0.74 +0.7
541,573 + CA264_02340 0.74 -0.1
541,695 - CA264_02340 0.82 +0.1
541,814 + -0.0
541,846 - +0.8
541,874 + -0.2
541,875 - -0.2
541,883 + +0.4
541,884 - +0.4
542,030 - +0.5
542,030 - +0.5
542,030 - -1.2
542,035 - +0.2
542,092 + -1.2
542,095 + +0.6
542,096 - +0.2
542,096 - +1.0
542,098 - +0.6
542,098 - +0.5
542,098 - -0.1
542,098 - +0.2
542,119 - +0.4
542,127 + -0.2
542,149 - -0.3
542,149 - -0.4
542,149 - -0.1
542,151 + -1.1
542,151 + -1.2
542,281 + CA264_02345 0.54 -0.0
542,282 - CA264_02345 0.54 +0.7
542,306 + CA264_02345 0.62 -0.0
542,311 + CA264_02345 0.64 +0.3
542,312 - CA264_02345 0.64 +1.0
542,312 - CA264_02345 0.64 +0.1
542,314 + CA264_02345 0.65 -0.2
542,314 + CA264_02345 0.65 +1.0
542,314 + CA264_02345 0.65 +2.6
542,414 + +0.8
542,489 - +0.6
542,522 - -0.4
542,535 + -0.0
542,547 + -0.0
542,548 - -0.3
542,569 - -0.8
542,583 - +0.1
542,584 + +0.1
542,584 + -0.0
542,585 - +0.4
542,585 - -0.0
542,585 - -0.1
542,594 + CA264_02350 0.10 +0.1
542,594 + CA264_02350 0.10 -1.8
542,616 - CA264_02350 0.12 +0.6
542,617 + CA264_02350 0.12 -0.0
542,617 + CA264_02350 0.12 +0.1
542,618 - CA264_02350 0.12 -1.0
542,622 - CA264_02350 0.12 +0.2
542,660 + CA264_02350 0.15 -0.2
542,751 - CA264_02350 0.21 -0.8
542,752 + CA264_02350 0.21 -0.8
542,753 - CA264_02350 0.21 -0.2
542,786 - CA264_02350 0.23 -0.1
542,852 + CA264_02350 0.28 -0.8
542,853 - CA264_02350 0.28 +0.1
542,853 - CA264_02350 0.28 -0.5
542,854 + CA264_02350 0.28 -0.5
542,891 - CA264_02350 0.31 -0.0
543,077 - CA264_02350 0.43 +0.6
543,190 - CA264_02350 0.51 -0.0
543,204 - CA264_02350 0.52 +0.1
543,352 + CA264_02350 0.62 -0.1
543,422 + CA264_02350 0.67 -0.5
543,422 + CA264_02350 0.67 -0.7
543,423 - CA264_02350 0.67 -0.2
543,622 + CA264_02350 0.80 +0.8
543,721 + CA264_02350 0.87 +0.0
543,757 + CA264_02350 0.90 -0.8
543,758 - CA264_02350 0.90 -0.2
543,788 - -1.0
543,788 - +0.3
543,788 - +1.0
543,890 - -0.3
543,892 - +1.2
543,915 + -0.1
543,915 + +0.1
543,916 - +0.5
543,916 - +0.4
543,916 - +1.0
543,948 + -0.0
543,948 + +0.0
543,948 + -0.4
543,948 + -0.1
543,948 + -0.3
543,948 + +0.3
543,949 - -0.2
543,949 - -0.4
543,949 - +0.6
543,950 + -0.4
543,950 + +0.1
543,951 - +1.3
544,039 + +0.7
544,039 + +0.1
544,039 + +0.1
544,040 - +0.9
544,040 - +0.5
544,074 + -0.2
544,098 + +0.2
544,098 + +0.2
544,099 - -0.7
544,257 + CA264_02355 0.19 -0.0
544,277 + CA264_02355 0.21 +1.0
544,278 - CA264_02355 0.21 -0.6
544,621 - CA264_02355 0.53 +1.0
544,624 + CA264_02355 0.54 -0.7
544,625 - CA264_02355 0.54 -1.8
544,625 - CA264_02355 0.54 -0.4
544,625 - CA264_02355 0.54 +0.1
544,699 + CA264_02355 0.61 -0.4
544,699 + CA264_02355 0.61 +1.1
544,699 + CA264_02355 0.61 -0.5
544,699 + CA264_02355 0.61 -0.8
544,702 + CA264_02355 0.61 -0.3
544,703 - CA264_02355 0.61 -0.1
544,712 - CA264_02355 0.62 -0.7
544,766 - CA264_02355 0.67 -0.4
544,766 - CA264_02355 0.67 -0.3
544,779 + CA264_02355 0.68 -0.6
544,780 - CA264_02355 0.68 -0.2
544,783 + CA264_02355 0.69 -0.7
544,783 + CA264_02355 0.69 +0.6
544,783 + CA264_02355 0.69 -0.1
544,784 - CA264_02355 0.69 +0.8

Or see this region's nucleotide sequence