Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01035 and CA264_01040 are separated by 283 nucleotides CA264_01040 and CA264_01045 are separated by 25 nucleotides
CA264_01035: CA264_01035 - hypothetical protein, at 228,935 to 230,023
_01035
CA264_01040: CA264_01040 - hypothetical protein, at 230,307 to 230,729
_01040
CA264_01045: CA264_01045 - hypothetical protein, at 230,755 to 231,579
_01045
Position (kb) 230
231 Strain fitness (log2 ratio) -1
0
1 at 229.952 kb on + strand at 229.953 kb on - strand at 229.969 kb on + strand at 229.975 kb on + strand at 230.021 kb on + strand at 230.022 kb on - strand at 230.029 kb on - strand at 230.030 kb on + strand at 230.031 kb on - strand at 230.040 kb on + strand at 230.041 kb on - strand at 230.060 kb on + strand at 230.061 kb on - strand at 230.086 kb on + strand at 230.086 kb on + strand at 230.087 kb on - strand at 230.217 kb on - strand at 230.217 kb on - strand at 230.236 kb on + strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.243 kb on + strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.245 kb on + strand at 230.246 kb on - strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.261 kb on + strand at 230.261 kb on + strand at 230.262 kb on - strand at 230.276 kb on + strand at 230.276 kb on + strand at 230.299 kb on + strand at 230.603 kb on + strand, within CA264_01040 at 230.621 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.702 kb on - strand at 230.723 kb on - strand at 230.728 kb on - strand at 230.728 kb on - strand at 230.742 kb on - strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.987 kb on - strand, within CA264_01045 at 230.987 kb on - strand, within CA264_01045 at 230.996 kb on + strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045 at 231.042 kb on - strand, within CA264_01045 at 231.047 kb on + strand, within CA264_01045 at 231.048 kb on - strand, within CA264_01045 at 231.132 kb on - strand, within CA264_01045 at 231.132 kb on - strand, within CA264_01045 at 231.189 kb on + strand, within CA264_01045 at 231.190 kb on - strand, within CA264_01045 at 231.241 kb on + strand, within CA264_01045 at 231.242 kb on - strand, within CA264_01045 at 231.289 kb on + strand, within CA264_01045 at 231.290 kb on - strand, within CA264_01045 at 231.371 kb on + strand, within CA264_01045 at 231.371 kb on + strand, within CA264_01045 at 231.375 kb on + strand, within CA264_01045 at 231.376 kb on - strand, within CA264_01045 at 231.376 kb on - strand, within CA264_01045 at 231.378 kb on - strand, within CA264_01045 at 231.393 kb on + strand, within CA264_01045 at 231.400 kb on + strand, within CA264_01045 at 231.400 kb on + strand, within CA264_01045 at 231.423 kb on - strand, within CA264_01045 at 231.433 kb on + strand, within CA264_01045 at 231.434 kb on - strand, within CA264_01045 at 231.468 kb on + strand, within CA264_01045 at 231.469 kb on - strand, within CA264_01045 at 231.499 kb on + strand at 231.499 kb on + strand at 231.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 229,952 + +0.8 229,953 - -0.6 229,969 + -0.1 229,975 + +0.1 230,021 + +0.0 230,022 - -0.3 230,029 - +1.0 230,030 + -0.3 230,031 - -1.6 230,040 + -1.0 230,041 - -0.7 230,060 + -1.6 230,061 - -1.1 230,086 + -0.2 230,086 + +0.7 230,087 - +0.6 230,217 - -0.3 230,217 - +0.4 230,236 + +0.1 230,242 - -0.9 230,242 - +1.0 230,242 - +0.0 230,243 + +0.5 230,244 - +1.0 230,244 - -0.4 230,244 - -0.2 230,244 - +0.5 230,245 + +0.4 230,246 - +1.1 230,247 + +0.0 230,247 + -0.4 230,247 + -0.1 230,247 + +0.0 230,247 + +0.8 230,247 + +1.4 230,248 - -0.1 230,248 - +0.8 230,248 - -1.6 230,261 + +0.6 230,261 + +1.2 230,262 - -0.1 230,276 + +0.0 230,276 + -0.1 230,299 + +0.2 230,603 + CA264_01040 0.70 +0.3 230,621 - CA264_01040 0.74 +0.2 230,635 - CA264_01040 0.78 +1.0 230,635 - CA264_01040 0.78 +0.8 230,702 - -0.6 230,723 - -1.0 230,728 - +0.8 230,728 - +0.4 230,742 - +0.0 230,761 + -0.6 230,761 + +0.1 230,761 + -0.3 230,987 - CA264_01045 0.28 -0.7 230,987 - CA264_01045 0.28 +1.0 230,996 + CA264_01045 0.29 -0.3 231,018 - CA264_01045 0.32 +0.4 231,018 - CA264_01045 0.32 -0.0 231,042 - CA264_01045 0.35 -0.1 231,047 + CA264_01045 0.35 -1.0 231,048 - CA264_01045 0.36 +0.2 231,132 - CA264_01045 0.46 -0.2 231,132 - CA264_01045 0.46 +1.6 231,189 + CA264_01045 0.53 -0.6 231,190 - CA264_01045 0.53 -0.2 231,241 + CA264_01045 0.59 +0.3 231,242 - CA264_01045 0.59 +0.6 231,289 + CA264_01045 0.65 -1.3 231,290 - CA264_01045 0.65 +0.0 231,371 + CA264_01045 0.75 +0.4 231,371 + CA264_01045 0.75 -0.9 231,375 + CA264_01045 0.75 -1.0 231,376 - CA264_01045 0.75 +0.2 231,376 - CA264_01045 0.75 +0.3 231,378 - CA264_01045 0.76 +0.0 231,393 + CA264_01045 0.77 +0.3 231,400 + CA264_01045 0.78 +0.2 231,400 + CA264_01045 0.78 -1.0 231,423 - CA264_01045 0.81 -0.1 231,433 + CA264_01045 0.82 -0.7 231,434 - CA264_01045 0.82 -0.8 231,468 + CA264_01045 0.86 +0.4 231,469 - CA264_01045 0.87 +1.0 231,499 + +0.4 231,499 + +1.0 231,500 - +0.4
Or see this region's nucleotide sequence