Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00530

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00520 and CA264_00525 are separated by 377 nucleotidesCA264_00525 and CA264_00530 are separated by 78 nucleotidesCA264_00530 and CA264_00535 are separated by 101 nucleotidesCA264_00535 and CA264_00540 are separated by 201 nucleotides CA264_00520: CA264_00520 - alcohol dehydrogenase, at 117,314 to 118,264 _00520 CA264_00525: CA264_00525 - hypothetical protein, at 118,642 to 118,995 _00525 CA264_00530: CA264_00530 - hypothetical protein, at 119,074 to 119,619 _00530 CA264_00535: CA264_00535 - hypothetical protein, at 119,721 to 120,290 _00535 CA264_00540: CA264_00540 - translational GTPase TypA, at 120,492 to 122,300 _00540 Position (kb) 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 118.109 kb on + strand, within CA264_00520at 118.109 kb on + strand, within CA264_00520at 118.110 kb on - strand, within CA264_00520at 118.110 kb on - strand, within CA264_00520at 118.147 kb on - strand, within CA264_00520at 118.148 kb on + strand, within CA264_00520at 118.148 kb on + strand, within CA264_00520at 118.148 kb on + strand, within CA264_00520at 118.149 kb on - strand, within CA264_00520at 118.199 kb on + strandat 118.215 kb on - strandat 118.247 kb on + strandat 118.270 kb on - strandat 118.270 kb on - strandat 118.272 kb on - strandat 118.272 kb on - strandat 118.276 kb on + strandat 118.288 kb on + strandat 118.288 kb on + strandat 118.288 kb on + strandat 118.299 kb on + strandat 118.322 kb on - strandat 118.360 kb on + strandat 118.361 kb on - strandat 118.361 kb on - strandat 118.361 kb on - strandat 118.377 kb on + strandat 118.378 kb on - strandat 118.412 kb on + strandat 118.495 kb on + strandat 118.496 kb on - strandat 118.607 kb on + strandat 118.622 kb on - strandat 118.622 kb on - strandat 118.728 kb on - strand, within CA264_00525at 118.748 kb on + strand, within CA264_00525at 118.757 kb on + strand, within CA264_00525at 118.758 kb on - strand, within CA264_00525at 118.758 kb on - strand, within CA264_00525at 118.758 kb on - strand, within CA264_00525at 118.761 kb on + strand, within CA264_00525at 118.762 kb on - strand, within CA264_00525at 118.879 kb on + strand, within CA264_00525at 118.880 kb on - strand, within CA264_00525at 118.907 kb on - strand, within CA264_00525at 118.937 kb on - strand, within CA264_00525at 118.964 kb on + strandat 118.965 kb on - strandat 118.967 kb on + strandat 119.011 kb on - strandat 119.014 kb on + strandat 119.015 kb on - strandat 119.015 kb on - strandat 119.049 kb on - strandat 119.049 kb on - strandat 119.049 kb on - strandat 119.076 kb on - strandat 119.090 kb on + strandat 119.091 kb on - strandat 119.091 kb on - strandat 119.095 kb on + strandat 119.101 kb on + strandat 119.101 kb on + strandat 119.102 kb on - strandat 119.140 kb on + strand, within CA264_00530at 119.141 kb on - strand, within CA264_00530at 119.158 kb on + strand, within CA264_00530at 119.159 kb on - strand, within CA264_00530at 119.219 kb on - strand, within CA264_00530at 119.224 kb on + strand, within CA264_00530at 119.225 kb on - strand, within CA264_00530at 119.302 kb on + strand, within CA264_00530at 119.319 kb on + strand, within CA264_00530at 119.320 kb on - strand, within CA264_00530at 119.320 kb on - strand, within CA264_00530at 119.320 kb on - strand, within CA264_00530at 119.324 kb on - strand, within CA264_00530at 119.324 kb on - strand, within CA264_00530at 119.335 kb on + strand, within CA264_00530at 119.382 kb on - strand, within CA264_00530at 119.539 kb on - strand, within CA264_00530at 119.541 kb on + strand, within CA264_00530at 119.542 kb on - strand, within CA264_00530at 119.542 kb on - strand, within CA264_00530at 119.551 kb on + strand, within CA264_00530at 119.572 kb on + strandat 119.584 kb on + strandat 119.596 kb on + strandat 119.634 kb on + strandat 119.722 kb on + strandat 119.759 kb on + strandat 119.759 kb on + strandat 119.808 kb on - strand, within CA264_00535at 119.872 kb on + strand, within CA264_00535at 119.872 kb on + strand, within CA264_00535at 119.873 kb on - strand, within CA264_00535at 119.894 kb on + strand, within CA264_00535at 119.968 kb on + strand, within CA264_00535at 119.969 kb on - strand, within CA264_00535at 119.969 kb on - strand, within CA264_00535at 119.991 kb on + strand, within CA264_00535at 119.991 kb on + strand, within CA264_00535at 119.992 kb on - strand, within CA264_00535at 120.019 kb on + strand, within CA264_00535at 120.019 kb on + strand, within CA264_00535at 120.020 kb on - strand, within CA264_00535at 120.023 kb on - strand, within CA264_00535at 120.024 kb on + strand, within CA264_00535at 120.024 kb on + strand, within CA264_00535at 120.080 kb on + strand, within CA264_00535at 120.080 kb on + strand, within CA264_00535at 120.081 kb on - strand, within CA264_00535at 120.081 kb on - strand, within CA264_00535at 120.082 kb on + strand, within CA264_00535at 120.083 kb on - strand, within CA264_00535at 120.083 kb on - strand, within CA264_00535at 120.099 kb on + strand, within CA264_00535at 120.190 kb on - strand, within CA264_00535at 120.190 kb on - strand, within CA264_00535at 120.191 kb on + strand, within CA264_00535at 120.191 kb on + strand, within CA264_00535at 120.224 kb on + strand, within CA264_00535at 120.242 kb on + strandat 120.242 kb on + strandat 120.261 kb on + strandat 120.262 kb on - strandat 120.262 kb on - strandat 120.351 kb on + strandat 120.372 kb on + strandat 120.373 kb on - strandat 120.380 kb on + strandat 120.381 kb on - strandat 120.454 kb on - strandat 120.493 kb on + strandat 120.566 kb on + strandat 120.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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118,109 + CA264_00520 0.84 +0.1
118,109 + CA264_00520 0.84 -0.6
118,110 - CA264_00520 0.84 -0.7
118,110 - CA264_00520 0.84 +0.4
118,147 - CA264_00520 0.88 -1.3
118,148 + CA264_00520 0.88 -1.0
118,148 + CA264_00520 0.88 -2.4
118,148 + CA264_00520 0.88 +0.1
118,149 - CA264_00520 0.88 -0.7
118,199 + -0.2
118,215 - +0.4
118,247 + -0.4
118,270 - -0.2
118,270 - +1.0
118,272 - +0.1
118,272 - -0.6
118,276 + -0.1
118,288 + -0.6
118,288 + +0.0
118,288 + -0.3
118,299 + -0.6
118,322 - +0.1
118,360 + -0.5
118,361 - -0.1
118,361 - +0.0
118,361 - +0.2
118,377 + -0.3
118,378 - +0.2
118,412 + -0.4
118,495 + -0.4
118,496 - +0.0
118,607 + -0.7
118,622 - -1.3
118,622 - -0.6
118,728 - CA264_00525 0.24 -0.1
118,748 + CA264_00525 0.30 -0.6
118,757 + CA264_00525 0.32 +1.4
118,758 - CA264_00525 0.33 +0.0
118,758 - CA264_00525 0.33 -0.2
118,758 - CA264_00525 0.33 +0.0
118,761 + CA264_00525 0.34 -0.4
118,762 - CA264_00525 0.34 +0.9
118,879 + CA264_00525 0.67 +0.1
118,880 - CA264_00525 0.67 -0.1
118,907 - CA264_00525 0.75 -0.1
118,937 - CA264_00525 0.83 -0.1
118,964 + -0.1
118,965 - +0.2
118,967 + +0.0
119,011 - +0.9
119,014 + +0.0
119,015 - -1.0
119,015 - -0.4
119,049 - -1.2
119,049 - -0.4
119,049 - +0.3
119,076 - -1.3
119,090 + -0.7
119,091 - -1.3
119,091 - -0.1
119,095 + +0.4
119,101 + +0.3
119,101 + +0.4
119,102 - +2.0
119,140 + CA264_00530 0.12 -0.0
119,141 - CA264_00530 0.12 -0.7
119,158 + CA264_00530 0.15 -0.0
119,159 - CA264_00530 0.16 +0.6
119,219 - CA264_00530 0.27 +1.1
119,224 + CA264_00530 0.27 -0.1
119,225 - CA264_00530 0.28 +0.4
119,302 + CA264_00530 0.42 +1.0
119,319 + CA264_00530 0.45 -0.5
119,320 - CA264_00530 0.45 +0.7
119,320 - CA264_00530 0.45 +1.0
119,320 - CA264_00530 0.45 +0.3
119,324 - CA264_00530 0.46 +0.5
119,324 - CA264_00530 0.46 +1.0
119,335 + CA264_00530 0.48 +0.1
119,382 - CA264_00530 0.56 +0.5
119,539 - CA264_00530 0.85 +0.2
119,541 + CA264_00530 0.86 +0.3
119,542 - CA264_00530 0.86 -0.4
119,542 - CA264_00530 0.86 +0.7
119,551 + CA264_00530 0.87 +0.4
119,572 + -0.1
119,584 + -0.5
119,596 + +0.1
119,634 + -1.2
119,722 + +1.0
119,759 + -0.3
119,759 + -0.1
119,808 - CA264_00535 0.15 +0.0
119,872 + CA264_00535 0.26 -0.4
119,872 + CA264_00535 0.26 +0.3
119,873 - CA264_00535 0.27 +0.0
119,894 + CA264_00535 0.30 +0.3
119,968 + CA264_00535 0.43 +0.0
119,969 - CA264_00535 0.44 +0.7
119,969 - CA264_00535 0.44 -0.3
119,991 + CA264_00535 0.47 +0.3
119,991 + CA264_00535 0.47 +0.6
119,992 - CA264_00535 0.48 -0.3
120,019 + CA264_00535 0.52 -0.3
120,019 + CA264_00535 0.52 -0.1
120,020 - CA264_00535 0.52 -0.1
120,023 - CA264_00535 0.53 +0.4
120,024 + CA264_00535 0.53 -0.4
120,024 + CA264_00535 0.53 -1.0
120,080 + CA264_00535 0.63 +0.0
120,080 + CA264_00535 0.63 +0.4
120,081 - CA264_00535 0.63 -0.1
120,081 - CA264_00535 0.63 +0.0
120,082 + CA264_00535 0.63 +0.3
120,083 - CA264_00535 0.64 -1.6
120,083 - CA264_00535 0.64 -0.7
120,099 + CA264_00535 0.66 +1.0
120,190 - CA264_00535 0.82 +0.2
120,190 - CA264_00535 0.82 -0.1
120,191 + CA264_00535 0.82 +1.0
120,191 + CA264_00535 0.82 +0.0
120,224 + CA264_00535 0.88 +1.0
120,242 + +0.6
120,242 + +1.0
120,261 + -1.0
120,262 - -0.8
120,262 - +1.7
120,351 + +0.2
120,372 + +1.0
120,373 - +0.1
120,380 + -0.1
120,381 - +0.5
120,454 - -0.8
120,493 + +0.8
120,566 + +1.0
120,602 - -2.3

Or see this region's nucleotide sequence