Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00400 and CA264_00405 are separated by 29 nucleotides CA264_00405 and CA264_00410 are separated by 158 nucleotides CA264_00410 and CA264_00415 are separated by 99 nucleotides
CA264_00400: CA264_00400 - alkyl hydroperoxide reductase, at 88,036 to 88,674
_00400
CA264_00405: CA264_00405 - transcriptional repressor, at 88,704 to 89,168
_00405
CA264_00410: CA264_00410 - enoyl-CoA hydratase, at 89,327 to 90,100
_00410
CA264_00415: CA264_00415 - aspartate kinase, at 90,200 to 91,474
_00415
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.348 kb on - strand, within CA264_00400 at 88.376 kb on + strand, within CA264_00400 at 88.551 kb on - strand, within CA264_00400 at 88.663 kb on + strand at 88.663 kb on + strand at 88.663 kb on + strand at 88.722 kb on - strand at 88.728 kb on + strand at 88.729 kb on - strand at 89.036 kb on - strand, within CA264_00405 at 89.114 kb on + strand, within CA264_00405 at 89.142 kb on + strand at 89.198 kb on - strand at 89.224 kb on + strand at 89.229 kb on + strand at 89.230 kb on - strand at 89.263 kb on + strand at 89.263 kb on + strand at 89.264 kb on - strand at 89.265 kb on + strand at 89.288 kb on + strand at 89.289 kb on - strand at 89.309 kb on + strand at 89.310 kb on - strand at 89.321 kb on - strand at 89.410 kb on - strand, within CA264_00410 at 89.547 kb on + strand, within CA264_00410 at 89.547 kb on + strand, within CA264_00410 at 89.609 kb on - strand, within CA264_00410 at 89.609 kb on - strand, within CA264_00410 at 89.705 kb on - strand, within CA264_00410 at 89.705 kb on - strand, within CA264_00410 at 89.705 kb on - strand, within CA264_00410 at 89.705 kb on - strand, within CA264_00410 at 89.821 kb on + strand, within CA264_00410 at 89.821 kb on + strand, within CA264_00410 at 89.822 kb on - strand, within CA264_00410 at 90.089 kb on + strand at 90.090 kb on - strand at 90.103 kb on + strand at 90.104 kb on - strand at 90.104 kb on - strand at 90.104 kb on - strand at 90.185 kb on + strand at 90.185 kb on + strand at 90.307 kb on - strand at 90.327 kb on + strand at 90.328 kb on - strand, within CA264_00415
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 88,348 - CA264_00400 0.49 +1.0 88,376 + CA264_00400 0.53 +0.3 88,551 - CA264_00400 0.81 +1.0 88,663 + +0.1 88,663 + +1.0 88,663 + +2.2 88,722 - -0.8 88,728 + -0.7 88,729 - -1.4 89,036 - CA264_00405 0.71 +0.3 89,114 + CA264_00405 0.88 +0.3 89,142 + +0.1 89,198 - -0.2 89,224 + -1.8 89,229 + -0.3 89,230 - +0.2 89,263 + +0.1 89,263 + -0.8 89,264 - +0.1 89,265 + +0.4 89,288 + -0.5 89,289 - -0.6 89,309 + -0.2 89,310 - +1.0 89,321 - +1.6 89,410 - CA264_00410 0.11 -0.2 89,547 + CA264_00410 0.28 -0.4 89,547 + CA264_00410 0.28 -0.7 89,609 - CA264_00410 0.36 -0.3 89,609 - CA264_00410 0.36 +1.4 89,705 - CA264_00410 0.49 +0.6 89,705 - CA264_00410 0.49 -0.4 89,705 - CA264_00410 0.49 -0.6 89,705 - CA264_00410 0.49 -0.3 89,821 + CA264_00410 0.64 -1.1 89,821 + CA264_00410 0.64 +0.0 89,822 - CA264_00410 0.64 +0.6 90,089 + -0.1 90,090 - +0.4 90,103 + +0.2 90,104 - +0.3 90,104 - +0.4 90,104 - +1.6 90,185 + -0.1 90,185 + -0.8 90,307 - -0.6 90,327 + -0.8 90,328 - CA264_00415 0.10 -1.3
Or see this region's nucleotide sequence