Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25125

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25115 and PFLU_RS25120 are separated by 182 nucleotidesPFLU_RS25120 and PFLU_RS25125 are separated by 195 nucleotidesPFLU_RS25125 and PFLU_RS25130 overlap by 4 nucleotides PFLU_RS25115: PFLU_RS25115 - cytochrome c family protein, at 5,615,476 to 5,615,850 _RS25115 PFLU_RS25120: PFLU_RS25120 - response regulator, at 5,616,033 to 5,616,413 _RS25120 PFLU_RS25125: PFLU_RS25125 - biliverdin-producing heme oxygenase, at 5,616,609 to 5,617,223 _RS25125 PFLU_RS25130: PFLU_RS25130 - GAF domain-containing protein, at 5,617,220 to 5,619,463 _RS25130 Position (kb) 5616 5617 5618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5615.649 kb on - strand, within PFLU_RS25115at 5615.649 kb on - strand, within PFLU_RS25115at 5615.649 kb on - strand, within PFLU_RS25115at 5615.649 kb on - strand, within PFLU_RS25115at 5615.655 kb on - strand, within PFLU_RS25115at 5615.655 kb on - strand, within PFLU_RS25115at 5615.655 kb on - strand, within PFLU_RS25115at 5615.655 kb on - strand, within PFLU_RS25115at 5615.843 kb on + strandat 5615.843 kb on + strandat 5615.843 kb on + strandat 5615.843 kb on + strandat 5615.844 kb on - strandat 5615.883 kb on + strandat 5615.883 kb on + strandat 5615.883 kb on + strandat 5615.883 kb on + strandat 5615.884 kb on - strandat 5615.884 kb on - strandat 5615.891 kb on + strandat 5615.927 kb on + strandat 5615.978 kb on + strandat 5615.978 kb on + strandat 5616.003 kb on + strandat 5616.003 kb on + strandat 5616.003 kb on + strandat 5616.003 kb on + strandat 5616.004 kb on - strandat 5616.004 kb on - strandat 5616.025 kb on + strandat 5616.026 kb on - strandat 5616.157 kb on - strand, within PFLU_RS25120at 5616.157 kb on - strand, within PFLU_RS25120at 5616.157 kb on - strand, within PFLU_RS25120at 5616.217 kb on + strand, within PFLU_RS25120at 5616.217 kb on + strand, within PFLU_RS25120at 5616.229 kb on - strand, within PFLU_RS25120at 5616.414 kb on + strandat 5616.414 kb on + strandat 5616.414 kb on + strandat 5616.465 kb on + strandat 5616.466 kb on - strandat 5616.466 kb on - strandat 5616.545 kb on + strandat 5616.545 kb on + strandat 5616.545 kb on + strandat 5616.546 kb on - strandat 5616.738 kb on + strand, within PFLU_RS25125at 5616.748 kb on + strand, within PFLU_RS25125at 5616.748 kb on + strand, within PFLU_RS25125at 5616.749 kb on - strand, within PFLU_RS25125at 5616.759 kb on + strand, within PFLU_RS25125at 5616.759 kb on + strand, within PFLU_RS25125at 5616.759 kb on + strand, within PFLU_RS25125at 5616.759 kb on + strand, within PFLU_RS25125at 5616.762 kb on + strand, within PFLU_RS25125at 5616.771 kb on + strand, within PFLU_RS25125at 5616.772 kb on - strand, within PFLU_RS25125at 5616.772 kb on - strand, within PFLU_RS25125at 5616.772 kb on - strand, within PFLU_RS25125at 5616.772 kb on - strand, within PFLU_RS25125at 5616.791 kb on - strand, within PFLU_RS25125at 5616.791 kb on - strand, within PFLU_RS25125at 5616.795 kb on + strand, within PFLU_RS25125at 5616.795 kb on + strand, within PFLU_RS25125at 5616.795 kb on + strand, within PFLU_RS25125at 5616.796 kb on - strand, within PFLU_RS25125at 5616.796 kb on - strand, within PFLU_RS25125at 5616.796 kb on - strand, within PFLU_RS25125at 5616.851 kb on + strand, within PFLU_RS25125at 5616.966 kb on + strand, within PFLU_RS25125at 5616.966 kb on + strand, within PFLU_RS25125at 5616.967 kb on - strand, within PFLU_RS25125at 5616.967 kb on - strand, within PFLU_RS25125at 5616.967 kb on - strand, within PFLU_RS25125at 5616.967 kb on - strand, within PFLU_RS25125at 5616.967 kb on - strand, within PFLU_RS25125at 5617.000 kb on + strand, within PFLU_RS25125at 5617.000 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.066 kb on + strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.067 kb on - strand, within PFLU_RS25125at 5617.068 kb on + strand, within PFLU_RS25125at 5617.068 kb on + strand, within PFLU_RS25125at 5617.068 kb on + strand, within PFLU_RS25125at 5617.069 kb on - strand, within PFLU_RS25125at 5617.069 kb on - strand, within PFLU_RS25125at 5617.069 kb on - strand, within PFLU_RS25125at 5617.110 kb on + strand, within PFLU_RS25125at 5617.111 kb on - strand, within PFLU_RS25125at 5617.111 kb on - strand, within PFLU_RS25125at 5617.213 kb on + strandat 5617.213 kb on + strandat 5617.213 kb on + strandat 5617.213 kb on + strandat 5617.213 kb on + strandat 5617.213 kb on + strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.214 kb on - strandat 5617.220 kb on - strandat 5617.220 kb on - strandat 5617.220 kb on - strandat 5617.220 kb on - strandat 5617.706 kb on + strand, within PFLU_RS25130at 5617.706 kb on + strand, within PFLU_RS25130at 5617.724 kb on + strand, within PFLU_RS25130at 5617.725 kb on - strand, within PFLU_RS25130at 5617.844 kb on + strand, within PFLU_RS25130at 5617.844 kb on + strand, within PFLU_RS25130at 5617.883 kb on + strand, within PFLU_RS25130at 5617.883 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.985 kb on + strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5617.986 kb on - strand, within PFLU_RS25130at 5618.020 kb on + strand, within PFLU_RS25130at 5618.020 kb on + strand, within PFLU_RS25130at 5618.021 kb on - strand, within PFLU_RS25130at 5618.021 kb on - strand, within PFLU_RS25130at 5618.131 kb on - strand, within PFLU_RS25130at 5618.131 kb on - strand, within PFLU_RS25130at 5618.131 kb on - strand, within PFLU_RS25130

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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5,615,649 - PFLU_RS25115 0.46 -0.6
5,615,649 - PFLU_RS25115 0.46 +0.2
5,615,649 - PFLU_RS25115 0.46 -0.0
5,615,649 - PFLU_RS25115 0.46 +0.2
5,615,655 - PFLU_RS25115 0.48 +0.4
5,615,655 - PFLU_RS25115 0.48 +0.6
5,615,655 - PFLU_RS25115 0.48 -0.3
5,615,655 - PFLU_RS25115 0.48 -1.4
5,615,843 + +1.5
5,615,843 + +2.2
5,615,843 + +0.6
5,615,843 + -0.3
5,615,844 - -0.6
5,615,883 + +0.3
5,615,883 + +0.2
5,615,883 + +0.3
5,615,883 + -0.2
5,615,884 - +0.4
5,615,884 - -0.5
5,615,891 + +0.8
5,615,927 + +0.3
5,615,978 + +0.6
5,615,978 + +0.3
5,616,003 + +0.2
5,616,003 + +0.4
5,616,003 + -0.3
5,616,003 + -0.3
5,616,004 - -0.5
5,616,004 - +0.3
5,616,025 + +0.7
5,616,026 - -0.3
5,616,157 - PFLU_RS25120 0.33 +1.9
5,616,157 - PFLU_RS25120 0.33 -1.3
5,616,157 - PFLU_RS25120 0.33 +0.6
5,616,217 + PFLU_RS25120 0.48 +0.3
5,616,217 + PFLU_RS25120 0.48 +0.7
5,616,229 - PFLU_RS25120 0.51 +0.4
5,616,414 + +0.2
5,616,414 + +0.5
5,616,414 + -0.8
5,616,465 + -0.3
5,616,466 - +0.1
5,616,466 - +0.0
5,616,545 + -0.1
5,616,545 + +0.0
5,616,545 + +0.3
5,616,546 - -0.9
5,616,738 + PFLU_RS25125 0.21 +1.1
5,616,748 + PFLU_RS25125 0.23 +1.2
5,616,748 + PFLU_RS25125 0.23 -0.2
5,616,749 - PFLU_RS25125 0.23 +0.8
5,616,759 + PFLU_RS25125 0.24 -0.3
5,616,759 + PFLU_RS25125 0.24 +0.7
5,616,759 + PFLU_RS25125 0.24 +0.4
5,616,759 + PFLU_RS25125 0.24 +0.9
5,616,762 + PFLU_RS25125 0.25 -0.7
5,616,771 + PFLU_RS25125 0.26 -0.7
5,616,772 - PFLU_RS25125 0.27 +0.1
5,616,772 - PFLU_RS25125 0.27 +1.5
5,616,772 - PFLU_RS25125 0.27 +0.0
5,616,772 - PFLU_RS25125 0.27 +0.7
5,616,791 - PFLU_RS25125 0.30 -0.2
5,616,791 - PFLU_RS25125 0.30 +1.0
5,616,795 + PFLU_RS25125 0.30 +0.6
5,616,795 + PFLU_RS25125 0.30 +0.9
5,616,795 + PFLU_RS25125 0.30 +0.1
5,616,796 - PFLU_RS25125 0.30 +0.1
5,616,796 - PFLU_RS25125 0.30 +1.3
5,616,796 - PFLU_RS25125 0.30 +0.2
5,616,851 + PFLU_RS25125 0.39 -1.6
5,616,966 + PFLU_RS25125 0.58 -1.8
5,616,966 + PFLU_RS25125 0.58 +0.0
5,616,967 - PFLU_RS25125 0.58 -0.2
5,616,967 - PFLU_RS25125 0.58 -0.7
5,616,967 - PFLU_RS25125 0.58 +0.4
5,616,967 - PFLU_RS25125 0.58 +0.7
5,616,967 - PFLU_RS25125 0.58 +0.5
5,617,000 + PFLU_RS25125 0.64 -0.2
5,617,000 + PFLU_RS25125 0.64 -0.1
5,617,066 + PFLU_RS25125 0.74 -0.5
5,617,066 + PFLU_RS25125 0.74 +0.6
5,617,066 + PFLU_RS25125 0.74 +0.4
5,617,066 + PFLU_RS25125 0.74 +0.8
5,617,066 + PFLU_RS25125 0.74 +0.0
5,617,066 + PFLU_RS25125 0.74 +0.7
5,617,067 - PFLU_RS25125 0.74 +0.8
5,617,067 - PFLU_RS25125 0.74 -0.4
5,617,067 - PFLU_RS25125 0.74 +0.5
5,617,067 - PFLU_RS25125 0.74 +0.4
5,617,067 - PFLU_RS25125 0.74 +0.8
5,617,067 - PFLU_RS25125 0.74 -1.5
5,617,067 - PFLU_RS25125 0.74 -0.3
5,617,067 - PFLU_RS25125 0.74 +0.8
5,617,068 + PFLU_RS25125 0.75 +0.3
5,617,068 + PFLU_RS25125 0.75 +0.2
5,617,068 + PFLU_RS25125 0.75 +0.5
5,617,069 - PFLU_RS25125 0.75 +0.1
5,617,069 - PFLU_RS25125 0.75 -0.5
5,617,069 - PFLU_RS25125 0.75 -1.0
5,617,110 + PFLU_RS25125 0.81 -0.4
5,617,111 - PFLU_RS25125 0.82 -0.7
5,617,111 - PFLU_RS25125 0.82 +0.3
5,617,213 + -0.4
5,617,213 + +0.1
5,617,213 + +0.5
5,617,213 + +1.1
5,617,213 + +0.4
5,617,213 + -1.2
5,617,214 - +1.1
5,617,214 - +0.1
5,617,214 - +1.9
5,617,214 - +0.6
5,617,214 - +0.5
5,617,214 - +0.5
5,617,214 - -1.5
5,617,214 - +0.7
5,617,214 - +0.9
5,617,220 - -0.4
5,617,220 - +0.2
5,617,220 - -1.1
5,617,220 - -0.1
5,617,706 + PFLU_RS25130 0.22 -0.5
5,617,706 + PFLU_RS25130 0.22 +0.8
5,617,724 + PFLU_RS25130 0.22 -1.3
5,617,725 - PFLU_RS25130 0.23 +1.1
5,617,844 + PFLU_RS25130 0.28 -0.7
5,617,844 + PFLU_RS25130 0.28 -1.2
5,617,883 + PFLU_RS25130 0.30 -1.0
5,617,883 + PFLU_RS25130 0.30 -0.4
5,617,985 + PFLU_RS25130 0.34 +0.9
5,617,985 + PFLU_RS25130 0.34 -0.3
5,617,985 + PFLU_RS25130 0.34 -0.4
5,617,985 + PFLU_RS25130 0.34 -3.0
5,617,985 + PFLU_RS25130 0.34 -0.8
5,617,985 + PFLU_RS25130 0.34 -0.4
5,617,985 + PFLU_RS25130 0.34 +0.6
5,617,985 + PFLU_RS25130 0.34 +0.2
5,617,986 - PFLU_RS25130 0.34 -0.7
5,617,986 - PFLU_RS25130 0.34 +0.0
5,617,986 - PFLU_RS25130 0.34 -1.3
5,617,986 - PFLU_RS25130 0.34 +0.7
5,617,986 - PFLU_RS25130 0.34 -0.2
5,617,986 - PFLU_RS25130 0.34 -0.5
5,617,986 - PFLU_RS25130 0.34 -0.2
5,617,986 - PFLU_RS25130 0.34 +0.1
5,617,986 - PFLU_RS25130 0.34 -0.2
5,617,986 - PFLU_RS25130 0.34 +0.3
5,618,020 + PFLU_RS25130 0.36 +0.7
5,618,020 + PFLU_RS25130 0.36 +0.3
5,618,021 - PFLU_RS25130 0.36 +0.4
5,618,021 - PFLU_RS25130 0.36 +0.9
5,618,131 - PFLU_RS25130 0.41 -0.5
5,618,131 - PFLU_RS25130 0.41 +0.2
5,618,131 - PFLU_RS25130 0.41 +0.2

Or see this region's nucleotide sequence