Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24365 and PFLU_RS24370 are separated by 123 nucleotides PFLU_RS24370 and PFLU_RS24375 are separated by 139 nucleotides PFLU_RS24375 and PFLU_RS24380 are separated by 31 nucleotides
PFLU_RS24365: PFLU_RS24365 - methyl-accepting chemotaxis protein, at 5,455,336 to 5,457,474
_RS24365
PFLU_RS24370: PFLU_RS24370 - NAD(P)H nitroreductase, at 5,457,598 to 5,458,161
_RS24370
PFLU_RS24375: PFLU_RS24375 - c-type cytochrome, at 5,458,301 to 5,459,728
_RS24375
PFLU_RS24380: PFLU_RS24380 - hypothetical protein, at 5,459,760 to 5,460,824
_RS24380
Position (kb) 5458
5459
5460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5457.472 kb on + strand at 5457.472 kb on + strand at 5457.472 kb on + strand at 5457.473 kb on - strand at 5457.476 kb on + strand at 5457.476 kb on + strand at 5457.476 kb on + strand at 5457.476 kb on + strand at 5457.476 kb on + strand at 5457.476 kb on + strand at 5457.477 kb on - strand at 5457.477 kb on - strand at 5457.524 kb on + strand at 5457.524 kb on + strand at 5457.525 kb on - strand at 5457.525 kb on - strand at 5457.525 kb on - strand at 5457.525 kb on - strand at 5457.532 kb on + strand at 5457.532 kb on + strand at 5457.532 kb on + strand at 5457.532 kb on + strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.533 kb on - strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.536 kb on + strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.537 kb on - strand at 5457.542 kb on + strand at 5457.543 kb on - strand at 5457.680 kb on + strand, within PFLU_RS24370 at 5457.680 kb on + strand, within PFLU_RS24370 at 5457.681 kb on - strand, within PFLU_RS24370 at 5457.681 kb on - strand, within PFLU_RS24370 at 5457.743 kb on + strand, within PFLU_RS24370 at 5457.743 kb on + strand, within PFLU_RS24370 at 5457.744 kb on - strand, within PFLU_RS24370 at 5457.788 kb on + strand, within PFLU_RS24370 at 5457.788 kb on + strand, within PFLU_RS24370 at 5457.788 kb on + strand, within PFLU_RS24370 at 5458.195 kb on + strand at 5458.227 kb on - strand at 5458.236 kb on + strand at 5458.236 kb on + strand at 5458.236 kb on + strand at 5458.236 kb on + strand at 5458.236 kb on + strand at 5458.237 kb on - strand at 5458.237 kb on - strand at 5458.259 kb on - strand at 5458.379 kb on - strand at 5458.379 kb on - strand at 5458.606 kb on + strand, within PFLU_RS24375 at 5458.607 kb on - strand, within PFLU_RS24375 at 5458.697 kb on + strand, within PFLU_RS24375 at 5458.698 kb on - strand, within PFLU_RS24375 at 5458.726 kb on - strand, within PFLU_RS24375 at 5458.742 kb on + strand, within PFLU_RS24375 at 5458.742 kb on + strand, within PFLU_RS24375 at 5458.743 kb on - strand, within PFLU_RS24375 at 5458.779 kb on + strand, within PFLU_RS24375 at 5458.779 kb on + strand, within PFLU_RS24375 at 5458.779 kb on + strand, within PFLU_RS24375 at 5458.779 kb on + strand, within PFLU_RS24375 at 5458.808 kb on + strand, within PFLU_RS24375 at 5458.808 kb on + strand, within PFLU_RS24375 at 5458.809 kb on - strand, within PFLU_RS24375 at 5458.809 kb on - strand, within PFLU_RS24375 at 5458.809 kb on - strand, within PFLU_RS24375 at 5458.809 kb on - strand, within PFLU_RS24375 at 5458.809 kb on - strand, within PFLU_RS24375 at 5458.855 kb on - strand, within PFLU_RS24375 at 5459.147 kb on - strand, within PFLU_RS24375 at 5459.261 kb on - strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.282 kb on + strand, within PFLU_RS24375 at 5459.283 kb on - strand, within PFLU_RS24375 at 5459.283 kb on - strand, within PFLU_RS24375 at 5459.283 kb on - strand, within PFLU_RS24375 at 5459.283 kb on - strand, within PFLU_RS24375 at 5459.283 kb on - strand, within PFLU_RS24375 at 5459.357 kb on + strand, within PFLU_RS24375 at 5459.357 kb on + strand, within PFLU_RS24375 at 5459.357 kb on + strand, within PFLU_RS24375 at 5459.357 kb on + strand, within PFLU_RS24375 at 5459.358 kb on - strand, within PFLU_RS24375 at 5459.358 kb on - strand, within PFLU_RS24375 at 5459.358 kb on - strand, within PFLU_RS24375 at 5459.358 kb on - strand, within PFLU_RS24375 at 5459.450 kb on + strand, within PFLU_RS24375 at 5459.451 kb on - strand, within PFLU_RS24375 at 5459.681 kb on - strand at 5459.724 kb on + strand at 5459.725 kb on - strand at 5459.725 kb on - strand at 5459.726 kb on + strand at 5459.726 kb on + strand at 5459.726 kb on + strand at 5459.726 kb on + strand at 5459.727 kb on - strand at 5459.742 kb on + strand at 5459.743 kb on - strand at 5459.880 kb on + strand, within PFLU_RS24380 at 5459.880 kb on + strand, within PFLU_RS24380 at 5459.881 kb on - strand, within PFLU_RS24380 at 5459.881 kb on - strand, within PFLU_RS24380 at 5459.931 kb on + strand, within PFLU_RS24380 at 5459.932 kb on - strand, within PFLU_RS24380 at 5460.180 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.186 kb on + strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.187 kb on - strand, within PFLU_RS24380 at 5460.195 kb on + strand, within PFLU_RS24380 at 5460.196 kb on - strand, within PFLU_RS24380 at 5460.725 kb on + strand at 5460.725 kb on + strand at 5460.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,457,472 + +0.4 5,457,472 + +0.2 5,457,472 + -0.7 5,457,473 - -0.3 5,457,476 + -0.0 5,457,476 + +0.2 5,457,476 + -0.1 5,457,476 + +1.2 5,457,476 + +0.6 5,457,476 + -0.9 5,457,477 - -0.3 5,457,477 - +0.1 5,457,524 + +1.2 5,457,524 + +0.7 5,457,525 - +0.5 5,457,525 - +0.7 5,457,525 - +0.5 5,457,525 - -0.2 5,457,532 + -0.2 5,457,532 + -1.6 5,457,532 + -0.6 5,457,532 + +1.9 5,457,533 - +0.2 5,457,533 - -0.4 5,457,533 - +0.8 5,457,533 - +0.9 5,457,533 - -0.8 5,457,533 - -0.4 5,457,533 - -0.5 5,457,536 + -0.3 5,457,536 + +0.1 5,457,536 + +1.6 5,457,536 + -1.4 5,457,536 + -0.2 5,457,536 + -0.7 5,457,536 + -0.1 5,457,536 + +0.2 5,457,536 + -1.2 5,457,536 + -0.9 5,457,536 + +0.3 5,457,536 + -0.9 5,457,536 + +0.7 5,457,537 - -0.3 5,457,537 - +1.1 5,457,537 - -0.6 5,457,537 - +0.2 5,457,537 - +2.0 5,457,537 - +0.6 5,457,537 - -0.7 5,457,537 - +0.2 5,457,537 - +0.1 5,457,537 - +0.9 5,457,537 - -0.3 5,457,537 - +1.1 5,457,537 - -0.1 5,457,537 - -1.1 5,457,537 - +0.0 5,457,537 - -0.6 5,457,537 - +0.4 5,457,537 - -0.2 5,457,542 + +1.4 5,457,543 - -1.0 5,457,680 + PFLU_RS24370 0.15 -0.1 5,457,680 + PFLU_RS24370 0.15 +0.2 5,457,681 - PFLU_RS24370 0.15 +1.1 5,457,681 - PFLU_RS24370 0.15 -0.0 5,457,743 + PFLU_RS24370 0.26 -0.4 5,457,743 + PFLU_RS24370 0.26 +0.3 5,457,744 - PFLU_RS24370 0.26 +0.4 5,457,788 + PFLU_RS24370 0.34 +0.5 5,457,788 + PFLU_RS24370 0.34 +0.1 5,457,788 + PFLU_RS24370 0.34 +0.3 5,458,195 + -0.4 5,458,227 - -1.5 5,458,236 + +0.6 5,458,236 + +0.9 5,458,236 + +0.9 5,458,236 + +0.5 5,458,236 + +0.8 5,458,237 - -0.6 5,458,237 - -0.9 5,458,259 - +0.4 5,458,379 - -0.9 5,458,379 - +0.9 5,458,606 + PFLU_RS24375 0.21 +0.1 5,458,607 - PFLU_RS24375 0.21 -0.4 5,458,697 + PFLU_RS24375 0.28 -0.0 5,458,698 - PFLU_RS24375 0.28 -0.3 5,458,726 - PFLU_RS24375 0.30 +0.4 5,458,742 + PFLU_RS24375 0.31 -0.4 5,458,742 + PFLU_RS24375 0.31 -3.5 5,458,743 - PFLU_RS24375 0.31 -0.9 5,458,779 + PFLU_RS24375 0.33 -0.3 5,458,779 + PFLU_RS24375 0.33 -0.2 5,458,779 + PFLU_RS24375 0.33 +0.8 5,458,779 + PFLU_RS24375 0.33 -0.1 5,458,808 + PFLU_RS24375 0.36 -0.5 5,458,808 + PFLU_RS24375 0.36 -0.1 5,458,809 - PFLU_RS24375 0.36 -0.5 5,458,809 - PFLU_RS24375 0.36 -0.9 5,458,809 - PFLU_RS24375 0.36 -0.6 5,458,809 - PFLU_RS24375 0.36 -0.5 5,458,809 - PFLU_RS24375 0.36 +0.5 5,458,855 - PFLU_RS24375 0.39 -1.5 5,459,147 - PFLU_RS24375 0.59 -1.0 5,459,261 - PFLU_RS24375 0.67 +0.1 5,459,282 + PFLU_RS24375 0.69 +0.1 5,459,282 + PFLU_RS24375 0.69 +0.1 5,459,282 + PFLU_RS24375 0.69 -2.0 5,459,282 + PFLU_RS24375 0.69 +0.6 5,459,282 + PFLU_RS24375 0.69 +0.2 5,459,282 + PFLU_RS24375 0.69 +1.6 5,459,283 - PFLU_RS24375 0.69 -0.9 5,459,283 - PFLU_RS24375 0.69 +0.6 5,459,283 - PFLU_RS24375 0.69 -0.4 5,459,283 - PFLU_RS24375 0.69 -0.1 5,459,283 - PFLU_RS24375 0.69 -0.2 5,459,357 + PFLU_RS24375 0.74 -0.3 5,459,357 + PFLU_RS24375 0.74 +0.1 5,459,357 + PFLU_RS24375 0.74 +0.7 5,459,357 + PFLU_RS24375 0.74 +0.2 5,459,358 - PFLU_RS24375 0.74 -0.3 5,459,358 - PFLU_RS24375 0.74 -0.1 5,459,358 - PFLU_RS24375 0.74 -1.1 5,459,358 - PFLU_RS24375 0.74 +0.2 5,459,450 + PFLU_RS24375 0.80 -0.7 5,459,451 - PFLU_RS24375 0.81 -1.0 5,459,681 - -1.1 5,459,724 + +0.4 5,459,725 - -0.0 5,459,725 - +0.5 5,459,726 + -1.0 5,459,726 + +0.1 5,459,726 + -0.1 5,459,726 + -0.6 5,459,727 - +0.2 5,459,742 + +0.5 5,459,743 - +0.1 5,459,880 + PFLU_RS24380 0.11 -0.6 5,459,880 + PFLU_RS24380 0.11 -0.6 5,459,881 - PFLU_RS24380 0.11 +0.5 5,459,881 - PFLU_RS24380 0.11 +0.3 5,459,931 + PFLU_RS24380 0.16 +1.0 5,459,932 - PFLU_RS24380 0.16 +0.3 5,460,180 + PFLU_RS24380 0.39 -0.1 5,460,186 + PFLU_RS24380 0.40 +0.2 5,460,186 + PFLU_RS24380 0.40 -0.0 5,460,186 + PFLU_RS24380 0.40 +1.4 5,460,186 + PFLU_RS24380 0.40 -0.5 5,460,186 + PFLU_RS24380 0.40 +0.4 5,460,186 + PFLU_RS24380 0.40 +1.4 5,460,186 + PFLU_RS24380 0.40 -0.2 5,460,186 + PFLU_RS24380 0.40 +0.2 5,460,186 + PFLU_RS24380 0.40 +1.0 5,460,186 + PFLU_RS24380 0.40 -1.9 5,460,187 - PFLU_RS24380 0.40 +0.3 5,460,187 - PFLU_RS24380 0.40 -0.4 5,460,187 - PFLU_RS24380 0.40 +0.1 5,460,187 - PFLU_RS24380 0.40 -0.4 5,460,187 - PFLU_RS24380 0.40 +0.9 5,460,187 - PFLU_RS24380 0.40 +0.3 5,460,187 - PFLU_RS24380 0.40 -0.4 5,460,195 + PFLU_RS24380 0.41 +0.5 5,460,196 - PFLU_RS24380 0.41 -0.9 5,460,725 + +0.1 5,460,725 + +0.8 5,460,726 - +0.0
Or see this region's nucleotide sequence