Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22220

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
4,994,719	+		PFLU_RS22210	0.22	-0.1
4,994,720	-		PFLU_RS22210	0.22	-0.1
4,994,720	-		PFLU_RS22210	0.22	+0.8
4,994,720	-		PFLU_RS22210	0.22	-1.2
4,994,720	-		PFLU_RS22210	0.22	+1.0
4,994,824	+		PFLU_RS22210	0.40	-0.4
4,994,824	+		PFLU_RS22210	0.40	-0.6
4,994,825	-		PFLU_RS22210	0.40	-0.1
4,994,825	-		PFLU_RS22210	0.40	-0.5
4,994,825	-		PFLU_RS22210	0.40	-1.3
4,994,825	-		PFLU_RS22210	0.40	-0.7
4,994,825	-		PFLU_RS22210	0.40	-1.6
4,994,896	+		PFLU_RS22210	0.52	-0.0
4,994,896	+		PFLU_RS22210	0.52	-1.1
4,994,896	+		PFLU_RS22210	0.52	-0.3
4,994,896	+		PFLU_RS22210	0.52	-0.5
4,994,897	-		PFLU_RS22210	0.52	+0.1
4,995,193	+				-1.1
4,995,193	+				-1.1
4,995,193	+				-1.2
4,995,193	+				+0.1
4,995,194	-				-0.2
4,995,194	-				+0.4
4,995,194	-				+2.1
4,995,194	-				-0.2
4,995,194	-				+0.2
4,995,194	-				-0.6
4,995,194	-				-0.4
4,995,206	+				-1.4
4,995,206	+				-0.3
4,995,207	-				+0.8
4,995,207	-				-0.7
4,995,207	-				+0.6
4,995,207	-				-0.6
4,995,207	-				+0.6
4,995,215	+				-0.8
4,995,215	+				-0.7
4,995,215	+				-0.2
4,995,215	+				-0.0
4,995,216	-				-0.0
4,995,216	-				-0.7
4,995,216	-				+0.6
4,995,216	-				-0.0
4,995,216	-				-0.1
4,995,216	-				+0.4
4,995,216	-				-0.4
4,995,235	+				+0.5
4,995,337	+				+0.2
4,995,337	+				-0.7
4,995,499	+		PFLU_RS22215	0.52	+0.2
4,995,500	-		PFLU_RS22215	0.52	-0.8
4,995,503	+		PFLU_RS22215	0.53	-0.3
4,995,504	-		PFLU_RS22215	0.53	-0.5
4,995,504	-		PFLU_RS22215	0.53	-1.7
4,995,550	+		PFLU_RS22215	0.68	-0.8
4,995,551	-		PFLU_RS22215	0.68	-0.5
4,995,551	-		PFLU_RS22215	0.68	-0.2
4,995,551	-		PFLU_RS22215	0.68	-2.1
4,995,665	+				-1.5
4,995,666	-				+0.3
4,995,680	+				+0.5
4,995,681	-				+0.6
4,995,717	+				-1.1
4,995,814	+		PFLU_RS22220	0.12	-0.8
4,995,814	+		PFLU_RS22220	0.12	-0.1
4,995,814	+		PFLU_RS22220	0.12	+0.1
4,995,814	+		PFLU_RS22220	0.12	-0.7
4,995,814	+		PFLU_RS22220	0.12	-0.4
4,995,815	-		PFLU_RS22220	0.12	+0.1
4,995,966	+		PFLU_RS22220	0.29	-1.1
4,995,966	+		PFLU_RS22220	0.29	-0.1
4,995,966	+		PFLU_RS22220	0.29	+0.8
4,995,966	+		PFLU_RS22220	0.29	+0.9
4,995,967	-		PFLU_RS22220	0.29	-0.9
4,995,992	+		PFLU_RS22220	0.32	-1.6
4,995,992	+		PFLU_RS22220	0.32	+0.5
4,995,992	+		PFLU_RS22220	0.32	+0.4
4,995,992	+		PFLU_RS22220	0.32	+0.1
4,995,992	+		PFLU_RS22220	0.32	-0.8
4,995,992	+		PFLU_RS22220	0.32	-0.1
4,995,993	-		PFLU_RS22220	0.32	+1.1
4,995,993	-		PFLU_RS22220	0.32	+0.8
4,995,993	-		PFLU_RS22220	0.32	+0.0
4,996,172	-		PFLU_RS22220	0.51	-0.5
4,996,196	+		PFLU_RS22220	0.54	-0.3
4,996,196	+		PFLU_RS22220	0.54	+0.9
4,996,196	+		PFLU_RS22220	0.54	-0.8
4,996,197	-		PFLU_RS22220	0.54	+0.5
4,996,197	-		PFLU_RS22220	0.54	-0.3
4,996,197	-		PFLU_RS22220	0.54	+0.6
4,996,466	+		PFLU_RS22220	0.83	+0.4
4,996,466	+		PFLU_RS22220	0.83	-0.7
4,996,504	+		PFLU_RS22220	0.87	-0.2
4,996,504	+		PFLU_RS22220	0.87	-2.0
4,996,504	+		PFLU_RS22220	0.87	+0.2
4,996,504	+		PFLU_RS22220	0.87	+0.5
4,996,505	-		PFLU_RS22220	0.87	-0.2
4,996,505	-		PFLU_RS22220	0.87	+0.2
4,996,505	-		PFLU_RS22220	0.87	-0.6
4,996,505	-		PFLU_RS22220	0.87	-0.4
4,996,510	+		PFLU_RS22220	0.88	+0.1
4,996,510	+		PFLU_RS22220	0.88	+0.1
4,996,510	+		PFLU_RS22220	0.88	+0.1
4,996,510	+		PFLU_RS22220	0.88	-0.4
4,996,510	+		PFLU_RS22220	0.88	+1.2
4,996,511	-		PFLU_RS22220	0.88	+0.4
4,996,511	-		PFLU_RS22220	0.88	-0.4
4,996,511	-		PFLU_RS22220	0.88	+0.7
4,996,674	+				+0.1
4,996,675	-				-0.0
4,996,684	-				+0.7
4,996,684	-				-0.2
4,996,760	-		PFLU_RS22225	0.15	-1.2
4,996,833	+		PFLU_RS22225	0.24	+0.7
4,996,833	+		PFLU_RS22225	0.24	-1.5
4,996,834	-		PFLU_RS22225	0.24	-0.4
4,996,967	+		PFLU_RS22225	0.41	-1.1
4,996,968	-		PFLU_RS22225	0.41	+0.3
4,996,989	-		PFLU_RS22225	0.44	+0.0
4,997,026	-		PFLU_RS22225	0.48	-0.1
4,997,026	-		PFLU_RS22225	0.48	+0.2
4,997,178	+		PFLU_RS22225	0.67	+0.3
4,997,178	+		PFLU_RS22225	0.67	+0.5
4,997,179	-		PFLU_RS22225	0.67	-0.5
4,997,179	-		PFLU_RS22225	0.67	-0.6
4,997,179	-		PFLU_RS22225	0.67	-0.9
4,997,179	-		PFLU_RS22225	0.67	+1.1
4,997,274	+		PFLU_RS22225	0.79	-1.6
4,997,274	+		PFLU_RS22225	0.79	+0.6
4,997,275	-		PFLU_RS22225	0.79	-1.5
4,997,275	-		PFLU_RS22225	0.79	+0.2
4,997,301	+		PFLU_RS22225	0.82	-0.9
4,997,301	+		PFLU_RS22225	0.82	+0.5
4,997,302	-		PFLU_RS22225	0.83	-0.7
4,997,302	-		PFLU_RS22225	0.83	-0.2
4,997,302	-		PFLU_RS22225	0.83	-1.3
4,997,302	-		PFLU_RS22225	0.83	-0.4
4,997,302	-		PFLU_RS22225	0.83	+0.5
4,997,305	+		PFLU_RS22225	0.83	+0.2
4,997,305	+		PFLU_RS22225	0.83	-0.4
4,997,305	+		PFLU_RS22225	0.83	+0.9
4,997,305	+		PFLU_RS22225	0.83	+0.2
4,997,305	+		PFLU_RS22225	0.83	+0.0
4,997,305	+		PFLU_RS22225	0.83	-1.2
4,997,306	-		PFLU_RS22225	0.83	+0.2
4,997,306	-		PFLU_RS22225	0.83	+0.7
4,997,306	-		PFLU_RS22225	0.83	-1.0
4,997,306	-		PFLU_RS22225	0.83	-0.4
4,997,306	-		PFLU_RS22225	0.83	+0.2
4,997,306	-		PFLU_RS22225	0.83	-0.8
4,997,306	-		PFLU_RS22225	0.83	+1.0
4,997,407	+				-0.1
4,997,408	-				-0.4
4,997,530	+		PFLU_RS22230	0.15	+2.1
4,997,530	+		PFLU_RS22230	0.15	-0.0
4,997,530	+		PFLU_RS22230	0.15	-0.1
4,997,530	+		PFLU_RS22230	0.15	-0.1
4,997,530	+		PFLU_RS22230	0.15	-0.5
4,997,530	+		PFLU_RS22230	0.15	+0.7
4,997,530	+		PFLU_RS22230	0.15	+0.5
4,997,530	+		PFLU_RS22230	0.15	-0.4
4,997,531	-		PFLU_RS22230	0.15	+0.4
4,997,531	-		PFLU_RS22230	0.15	-0.4
4,997,531	-		PFLU_RS22230	0.15	+0.4
4,997,531	-		PFLU_RS22230	0.15	+0.0
4,997,531	-		PFLU_RS22230	0.15	+0.0
4,997,531	-		PFLU_RS22230	0.15	-0.5
4,997,531	-		PFLU_RS22230	0.15	+0.7
4,997,613	+		PFLU_RS22230	0.30	-0.2
4,997,613	+		PFLU_RS22230	0.30	-0.8
4,997,613	+		PFLU_RS22230	0.30	+0.1
4,997,613	+		PFLU_RS22230	0.30	+0.3
4,997,614	-		PFLU_RS22230	0.30	-0.4
4,997,614	-		PFLU_RS22230	0.30	-0.0
4,997,614	-		PFLU_RS22230	0.30	+0.2
4,997,614	-		PFLU_RS22230	0.30	+0.3
4,997,614	-		PFLU_RS22230	0.30	-0.0
4,997,614	-		PFLU_RS22230	0.30	+0.1
4,997,614	-		PFLU_RS22230	0.30	+1.1