Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18010 and PFLU_RS18015 are separated by 100 nucleotides PFLU_RS18015 and PFLU_RS18020 overlap by 4 nucleotides PFLU_RS18020 and PFLU_RS18025 are separated by 15 nucleotides PFLU_RS18025 and PFLU_RS18030 are separated by 47 nucleotides
PFLU_RS18010: PFLU_RS18010 - dihydrofolate reductase, at 4,086,541 to 4,087,485
_RS18010
PFLU_RS18015: PFLU_RS18015 - energy transducer TonB, at 4,087,586 to 4,088,359
_RS18015
PFLU_RS18020: PFLU_RS18020 - protein TolR, at 4,088,356 to 4,088,802
_RS18020
PFLU_RS18025: PFLU_RS18025 - protein TolQ, at 4,088,818 to 4,089,510
_RS18025
PFLU_RS18030: PFLU_RS18030 - phytase, at 4,089,558 to 4,091,423
_RS18030
Position (kb) 4088
4089 Strain fitness (log2 ratio) -1
0
1 at 4087.445 kb on - strand at 4087.445 kb on - strand at 4087.456 kb on - strand at 4087.587 kb on + strand at 4087.672 kb on + strand, within PFLU_RS18015 at 4087.672 kb on + strand, within PFLU_RS18015 at 4087.764 kb on + strand, within PFLU_RS18015 at 4087.764 kb on + strand, within PFLU_RS18015 at 4088.179 kb on + strand, within PFLU_RS18015 at 4088.180 kb on - strand, within PFLU_RS18015 at 4088.180 kb on - strand, within PFLU_RS18015 at 4088.465 kb on + strand, within PFLU_RS18020 at 4088.465 kb on + strand, within PFLU_RS18020 at 4088.466 kb on - strand, within PFLU_RS18020 at 4088.494 kb on + strand, within PFLU_RS18020 at 4088.583 kb on - strand, within PFLU_RS18020 at 4088.583 kb on - strand, within PFLU_RS18020 at 4088.583 kb on - strand, within PFLU_RS18020 at 4088.744 kb on + strand, within PFLU_RS18020 at 4088.744 kb on + strand, within PFLU_RS18020 at 4088.744 kb on + strand, within PFLU_RS18020 at 4088.744 kb on + strand, within PFLU_RS18020 at 4088.745 kb on - strand, within PFLU_RS18020 at 4088.745 kb on - strand, within PFLU_RS18020 at 4088.745 kb on - strand, within PFLU_RS18020 at 4088.745 kb on - strand, within PFLU_RS18020 at 4088.897 kb on + strand, within PFLU_RS18025 at 4088.898 kb on - strand, within PFLU_RS18025 at 4088.942 kb on + strand, within PFLU_RS18025 at 4089.101 kb on + strand, within PFLU_RS18025 at 4089.101 kb on + strand, within PFLU_RS18025 at 4089.102 kb on - strand, within PFLU_RS18025 at 4089.402 kb on - strand, within PFLU_RS18025 at 4089.489 kb on + strand at 4089.489 kb on + strand at 4089.489 kb on + strand at 4089.490 kb on - strand at 4089.490 kb on - strand at 4089.490 kb on - strand at 4089.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,087,445 - +0.8 4,087,445 - +0.3 4,087,456 - +0.3 4,087,587 + +0.5 4,087,672 + PFLU_RS18015 0.11 +0.4 4,087,672 + PFLU_RS18015 0.11 -0.0 4,087,764 + PFLU_RS18015 0.23 +0.5 4,087,764 + PFLU_RS18015 0.23 -0.8 4,088,179 + PFLU_RS18015 0.77 +0.2 4,088,180 - PFLU_RS18015 0.77 -0.4 4,088,180 - PFLU_RS18015 0.77 +0.4 4,088,465 + PFLU_RS18020 0.24 -0.5 4,088,465 + PFLU_RS18020 0.24 -0.1 4,088,466 - PFLU_RS18020 0.25 -0.5 4,088,494 + PFLU_RS18020 0.31 -0.4 4,088,583 - PFLU_RS18020 0.51 -0.2 4,088,583 - PFLU_RS18020 0.51 -0.4 4,088,583 - PFLU_RS18020 0.51 +0.4 4,088,744 + PFLU_RS18020 0.87 -1.3 4,088,744 + PFLU_RS18020 0.87 +0.4 4,088,744 + PFLU_RS18020 0.87 -0.1 4,088,744 + PFLU_RS18020 0.87 +0.5 4,088,745 - PFLU_RS18020 0.87 -0.3 4,088,745 - PFLU_RS18020 0.87 +0.2 4,088,745 - PFLU_RS18020 0.87 +0.5 4,088,745 - PFLU_RS18020 0.87 -0.9 4,088,897 + PFLU_RS18025 0.11 -0.2 4,088,898 - PFLU_RS18025 0.12 +0.5 4,088,942 + PFLU_RS18025 0.18 +0.3 4,089,101 + PFLU_RS18025 0.41 +0.3 4,089,101 + PFLU_RS18025 0.41 +0.6 4,089,102 - PFLU_RS18025 0.41 +0.1 4,089,402 - PFLU_RS18025 0.84 +0.3 4,089,489 + -0.1 4,089,489 + +0.2 4,089,489 + +0.3 4,089,490 - -0.3 4,089,490 - -0.9 4,089,490 - -0.7 4,089,522 + +0.4
Or see this region's nucleotide sequence