Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12445

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
2,780,542	+				-0.2
2,780,542	+				+1.3
2,780,543	-				+0.4
2,780,543	-				+0.9
2,780,543	-				-0.9
2,780,746	+				-0.4
2,780,747	-				-0.3
2,780,747	-				+0.4
2,780,825	-				-0.5
2,781,025	-				-0.3
2,781,316	+				-0.4
2,781,536	+				+0.7
2,781,537	-				+0.3
2,781,538	+				-0.3
2,781,538	+				+1.1
2,781,538	+				+1.1
2,781,539	-				-0.6
2,781,539	-				+1.9
2,781,557	-				-1.7
2,781,557	-				+1.6
2,781,557	-				+1.5
2,781,557	-				+1.2
2,781,647	-				+0.9
2,781,647	-				+0.4
2,781,700	+				+1.1
2,781,769	+		PFLU_RS12445	0.12	+0.4
2,781,769	+		PFLU_RS12445	0.12	+0.6
2,781,769	+		PFLU_RS12445	0.12	+1.7
2,781,854	-		PFLU_RS12445	0.15	-0.3
2,781,864	+		PFLU_RS12445	0.16	+0.7
2,781,864	+		PFLU_RS12445	0.16	+0.7
2,781,864	+		PFLU_RS12445	0.16	+1.0
2,781,865	-		PFLU_RS12445	0.16	-0.6
2,781,943	+		PFLU_RS12445	0.19	+0.5
2,781,973	+		PFLU_RS12445	0.20	+0.3
2,781,974	-		PFLU_RS12445	0.20	+0.8
2,781,974	-		PFLU_RS12445	0.20	+1.3
2,782,018	+		PFLU_RS12445	0.22	+0.7
2,782,018	+		PFLU_RS12445	0.22	+0.6
2,782,018	+		PFLU_RS12445	0.22	+0.8
2,782,018	+		PFLU_RS12445	0.22	+0.9
2,782,019	-		PFLU_RS12445	0.22	+1.0
2,782,019	-		PFLU_RS12445	0.22	+2.0
2,782,019	-		PFLU_RS12445	0.22	+1.1
2,782,075	+		PFLU_RS12445	0.25	+0.8
2,782,123	+		PFLU_RS12445	0.27	+0.0
2,782,124	-		PFLU_RS12445	0.27	+1.2
2,782,124	-		PFLU_RS12445	0.27	+2.0
2,782,124	-		PFLU_RS12445	0.27	+0.5
2,782,124	-		PFLU_RS12445	0.27	+0.7
2,782,124	-		PFLU_RS12445	0.27	-0.3
2,782,149	-		PFLU_RS12445	0.28	-1.0
2,782,235	-		PFLU_RS12445	0.31	+0.5
2,782,235	-		PFLU_RS12445	0.31	+1.2
2,782,261	+		PFLU_RS12445	0.32	+0.9
2,782,261	+		PFLU_RS12445	0.32	+0.1
2,782,262	-		PFLU_RS12445	0.32	+0.6
2,782,327	+		PFLU_RS12445	0.35	+1.1
2,782,327	+		PFLU_RS12445	0.35	-0.6
2,782,327	+		PFLU_RS12445	0.35	+0.8
2,782,327	+		PFLU_RS12445	0.35	+2.0
2,782,327	+		PFLU_RS12445	0.35	+0.6
2,782,327	+		PFLU_RS12445	0.35	-0.9
2,782,328	-		PFLU_RS12445	0.35	+2.8
2,782,328	-		PFLU_RS12445	0.35	-1.6
2,782,328	-		PFLU_RS12445	0.35	+0.2
2,782,328	-		PFLU_RS12445	0.35	+0.3
2,782,328	-		PFLU_RS12445	0.35	+1.4
2,782,328	-		PFLU_RS12445	0.35	+1.9
2,782,360	+		PFLU_RS12445	0.36	+0.5
2,782,360	+		PFLU_RS12445	0.36	+0.6
2,782,360	+		PFLU_RS12445	0.36	+0.4
2,782,360	+		PFLU_RS12445	0.36	-0.6
2,782,361	-		PFLU_RS12445	0.36	+2.0
2,782,361	-		PFLU_RS12445	0.36	+1.5
2,782,361	-		PFLU_RS12445	0.36	+0.9
2,782,412	-		PFLU_RS12445	0.38	+1.1
2,782,412	-		PFLU_RS12445	0.38	+0.2
2,782,424	+		PFLU_RS12445	0.39	+1.7
2,782,424	+		PFLU_RS12445	0.39	+0.9
2,782,424	+		PFLU_RS12445	0.39	+1.1
2,782,425	-		PFLU_RS12445	0.39	+0.8
2,782,544	-		PFLU_RS12445	0.44	-0.8
2,782,579	+		PFLU_RS12445	0.45	+0.9
2,782,654	+		PFLU_RS12445	0.48	-0.2
2,782,654	+		PFLU_RS12445	0.48	+1.9
2,782,654	+		PFLU_RS12445	0.48	+1.2
2,782,924	+		PFLU_RS12445	0.59	+0.6
2,782,925	-		PFLU_RS12445	0.59	-0.4
2,782,927	+		PFLU_RS12445	0.60	+0.8
2,782,927	+		PFLU_RS12445	0.60	+1.3
2,782,927	+		PFLU_RS12445	0.60	+1.2
2,782,979	-		PFLU_RS12445	0.62	+0.4
2,783,031	+		PFLU_RS12445	0.64	+1.6
2,783,031	+		PFLU_RS12445	0.64	+0.5
2,783,031	+		PFLU_RS12445	0.64	+0.5
2,783,031	+		PFLU_RS12445	0.64	+1.9
2,783,032	-		PFLU_RS12445	0.64	+1.4
2,783,032	-		PFLU_RS12445	0.64	+1.0
2,783,032	-		PFLU_RS12445	0.64	+0.3
2,783,032	-		PFLU_RS12445	0.64	-0.8
2,783,051	-		PFLU_RS12445	0.65	+1.1
2,783,051	-		PFLU_RS12445	0.65	-0.2
2,783,299	+		PFLU_RS12445	0.75	+0.9
2,783,300	-		PFLU_RS12445	0.75	+0.9
2,783,302	+		PFLU_RS12445	0.75	+0.4
2,783,302	+		PFLU_RS12445	0.75	+0.4
2,783,302	+		PFLU_RS12445	0.75	-0.0
2,783,302	+		PFLU_RS12445	0.75	-0.6
2,783,310	-		PFLU_RS12445	0.75	+1.1
2,783,324	-		PFLU_RS12445	0.76	-0.2
2,783,324	-		PFLU_RS12445	0.76	+0.3
2,783,483	-		PFLU_RS12445	0.82	+1.2
2,783,657	+		PFLU_RS12445	0.89	+0.7
2,783,800	+				-0.1
2,783,800	+				+1.9
2,783,800	+				+0.3
2,783,929	-				+0.6
2,783,929	-				+1.4
2,783,935	+				-0.1
2,783,936	-				-0.0
2,783,957	+				-0.4
2,783,977	-				+0.1
2,783,983	-				-1.2
2,783,996	+				-0.2
2,783,997	-				+0.6
2,784,068	+				+0.5
2,784,163	-				+0.5
2,784,163	-				-0.7
2,784,212	+		PFLU_RS12450	0.11	+1.4
2,784,213	-		PFLU_RS12450	0.11	+2.9
2,784,346	-		PFLU_RS12450	0.20	+0.3
2,784,349	+		PFLU_RS12450	0.20	+0.1
2,784,349	+		PFLU_RS12450	0.20	+0.5
2,784,350	-		PFLU_RS12450	0.20	-1.3
2,784,405	+		PFLU_RS12450	0.23	-1.3
2,784,405	+		PFLU_RS12450	0.23	+0.0
2,784,406	-		PFLU_RS12450	0.23	+0.1
2,784,406	-		PFLU_RS12450	0.23	+0.1
2,784,406	-		PFLU_RS12450	0.23	+0.8
2,784,406	-		PFLU_RS12450	0.23	-0.2
2,784,408	+		PFLU_RS12450	0.23	+0.2
2,784,409	-		PFLU_RS12450	0.23	+0.5
2,784,409	-		PFLU_RS12450	0.23	-0.5
2,784,409	-		PFLU_RS12450	0.23	-0.7
2,784,566	-		PFLU_RS12450	0.33	+0.2
2,784,566	-		PFLU_RS12450	0.33	-0.7
2,784,569	+		PFLU_RS12450	0.33	-0.2
2,784,569	+		PFLU_RS12450	0.33	+0.1
2,784,569	+		PFLU_RS12450	0.33	+0.2
2,784,569	+		PFLU_RS12450	0.33	+1.7
2,784,569	+		PFLU_RS12450	0.33	+2.0
2,784,569	+		PFLU_RS12450	0.33	+0.4
2,784,569	+		PFLU_RS12450	0.33	+0.6
2,784,569	+		PFLU_RS12450	0.33	-0.1
2,784,570	-		PFLU_RS12450	0.33	-1.0
2,784,570	-		PFLU_RS12450	0.33	-0.8
2,784,570	-		PFLU_RS12450	0.33	-0.5
2,784,570	-		PFLU_RS12450	0.33	+0.1
2,784,570	-		PFLU_RS12450	0.33	-0.7
2,784,570	-		PFLU_RS12450	0.33	+0.9
2,784,570	-		PFLU_RS12450	0.33	+0.4
2,784,648	+		PFLU_RS12450	0.38	+0.4
2,784,757	+		PFLU_RS12450	0.44	+0.0
2,784,831	+		PFLU_RS12450	0.49	-1.8
2,784,831	+		PFLU_RS12450	0.49	+0.3
2,784,832	-		PFLU_RS12450	0.49	+0.7
2,784,884	-		PFLU_RS12450	0.52	+0.7
2,784,886	-		PFLU_RS12450	0.52	-0.2